Wall clock time and date at job start Mon Mar 30 2020 01:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47161 * 2 1 4 4 C 1.53001 * 109.46888 * 240.00461 * 2 1 3 5 5 C 1.53000 * 109.47304 * 120.00646 * 2 1 3 6 6 C 1.52999 * 115.54733 * 205.67213 * 5 2 1 7 7 C 1.52994 * 117.49792 * 351.37258 * 5 2 1 8 8 C 1.52990 * 117.50085 * 59.99663 * 5 2 1 9 9 H 1.08995 * 117.50354 * 0.02562 * 8 5 2 10 10 C 1.50702 * 117.49806 * 145.02067 * 8 5 2 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 8 5 12 12 C 1.37884 * 119.99942 * 179.72069 * 10 8 5 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 8 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 8 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 H 1.09000 * 109.47313 * 299.99825 * 1 2 3 19 19 H 1.08999 * 109.47408 * 59.99603 * 1 2 3 20 20 H 1.09004 * 109.47580 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47036 * 180.02562 * 3 2 1 22 22 H 1.08999 * 109.47284 * 300.00472 * 3 2 1 23 23 H 1.08998 * 109.46822 * 60.00683 * 3 2 1 24 24 H 1.08998 * 109.47086 * 299.99663 * 4 2 1 25 25 H 1.08999 * 109.47149 * 59.99777 * 4 2 1 26 26 H 1.09005 * 109.47081 * 180.02562 * 4 2 1 27 27 H 1.09004 * 109.47011 * 274.32159 * 6 5 2 28 28 H 1.08997 * 109.47524 * 34.32432 * 6 5 2 29 29 H 1.09000 * 109.47201 * 154.32823 * 6 5 2 30 30 H 1.08999 * 117.50086 * 0.02562 * 7 5 2 31 31 H 1.09007 * 117.49837 * 214.98534 * 7 5 2 32 32 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7214 1.2491 6 6 3.4329 -0.3072 1.7278 7 6 1.0105 -1.1018 2.3150 8 6 1.6357 -2.1853 1.4341 9 1 1.0067 -2.6347 0.6657 10 6 2.6399 -3.1089 2.0742 11 1 3.6025 -2.7292 2.3833 12 6 2.3272 -4.4373 2.2710 13 7 1.1547 -4.8995 1.8950 14 14 3.5689 -5.5804 3.0714 15 1 3.8942 -5.0830 4.4324 16 1 2.9942 -6.9464 3.1674 17 1 4.8057 -5.6208 2.2505 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0277 0.0005 21 1 3.1300 1.4425 -0.0005 22 1 1.6766 1.9564 -0.8899 23 1 1.6767 1.9562 0.8900 24 1 1.6766 -1.7488 -1.2494 25 1 1.6765 -0.2073 -2.1393 26 1 3.1299 -0.7216 -1.2491 27 1 4.1873 -0.8842 1.1928 28 1 3.5828 0.7549 1.5340 29 1 3.5210 -0.4974 2.7974 30 1 -0.0303 -0.8386 2.1262 31 1 1.3254 -1.0570 3.3576 32 1 0.9349 -5.8342 2.0332 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260418120.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:34 Heat of formation + Delta-G solvation = -15.447697 kcal Electronic energy + Delta-G solvation = -11571.464465 eV Core-core repulsion = 9724.408736 eV Total energy + Delta-G solvation = -1847.055728 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.20248 -35.44778 -33.75380 -30.06030 -28.25088 -27.57902 -26.80175 -22.75532 -22.03927 -18.54208 -17.99210 -16.68270 -16.41415 -15.16163 -14.85234 -14.41761 -14.09010 -13.57925 -13.49272 -13.20073 -12.94978 -12.83194 -12.56316 -12.39814 -12.31552 -11.98259 -11.78955 -11.73151 -11.27131 -11.00538 -10.86831 -10.15455 -9.79600 -8.15921 -6.19007 1.39641 1.41520 1.49422 2.41170 3.03216 3.55892 3.98058 4.07774 4.32281 4.47449 4.63148 4.72137 4.84208 4.86074 4.90889 5.00317 5.07150 5.14203 5.16493 5.21699 5.23420 5.30640 5.35996 5.36943 5.58506 5.66368 5.69694 5.82758 5.90492 6.44893 6.88481 7.42647 8.95505 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.057623 B = 0.012180 C = 0.011529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.800306 B = 2298.322111 C = 2427.975852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.032 4.032 3 C -0.131 4.131 4 C -0.130 4.130 5 C -0.126 4.126 6 C -0.098 4.098 7 C -0.208 4.208 8 C 0.008 3.992 9 H 0.041 0.959 10 C -0.504 4.504 11 H 0.060 0.940 12 C 0.009 3.991 13 N -0.928 5.928 14 Si 0.958 3.042 15 H -0.270 1.270 16 H -0.284 1.284 17 H -0.268 1.268 18 H 0.056 0.944 19 H 0.069 0.931 20 H 0.030 0.970 21 H 0.061 0.939 22 H 0.067 0.933 23 H 0.054 0.946 24 H 0.028 0.972 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.042 0.958 28 H 0.076 0.924 29 H 0.035 0.965 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.873 9.713 -3.474 10.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.032 4.032 3 C -0.188 4.188 4 C -0.188 4.188 5 C -0.126 4.126 6 C -0.155 4.155 7 C -0.246 4.246 8 C -0.010 4.010 9 H 0.059 0.941 10 C -0.542 4.542 11 H 0.078 0.922 12 C -0.190 4.190 13 N -0.567 5.567 14 Si 0.783 3.217 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.192 1.192 18 H 0.075 0.925 19 H 0.088 0.912 20 H 0.049 0.951 21 H 0.080 0.920 22 H 0.086 0.914 23 H 0.073 0.927 24 H 0.047 0.953 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.095 0.905 29 H 0.055 0.945 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.772 9.545 -3.479 10.313 hybrid contribution 0.208 -1.153 0.638 1.334 sum 1.980 8.393 -2.841 9.079 Atomic orbital electron populations 1.21904 0.95153 1.00505 1.01733 1.20007 0.94943 0.95529 0.92715 1.21855 1.01215 0.93852 1.01860 1.21756 1.00748 0.99276 0.96995 1.21629 0.95032 0.99434 0.96485 1.21227 0.94321 1.00645 0.99322 1.23279 0.96720 1.09658 0.94958 1.19734 0.97529 0.86734 0.97004 0.94068 1.21061 1.00680 0.93927 1.38490 0.92156 1.25868 0.97092 0.99871 0.96127 1.70099 1.22815 1.15308 1.48487 0.85615 0.79218 0.77656 0.79220 1.19499 1.20948 1.19246 0.92495 0.91210 0.95072 0.91966 0.91440 0.92682 0.95253 0.91227 0.93042 0.93885 0.90516 0.94536 0.90303 0.92167 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.42 7.07 71.98 0.51 -3.91 16 2 C -0.03 -1.07 0.79 -52.18 -0.04 -1.12 16 3 C -0.13 -3.44 7.48 71.98 0.54 -2.90 16 4 C -0.13 -4.37 8.31 71.98 0.60 -3.77 16 5 C -0.13 -5.19 1.91 -52.19 -0.10 -5.29 16 6 C -0.10 -3.72 8.07 71.98 0.58 -3.14 16 7 C -0.21 -9.64 8.92 30.59 0.27 -9.37 16 8 C 0.01 0.44 4.43 -11.54 -0.05 0.39 16 9 H 0.04 2.41 6.83 -2.39 -0.02 2.40 16 10 C -0.50 -28.66 8.75 25.60 0.22 -28.43 16 11 H 0.06 3.33 6.60 -2.91 -0.02 3.31 16 12 C 0.01 0.50 5.46 84.66 0.46 0.96 16 13 N -0.93 -56.47 13.13 21.45 0.28 -56.19 16 14 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 15 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 16 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 18 H 0.06 1.79 6.98 -2.39 -0.02 1.77 16 19 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 20 H 0.03 1.17 7.07 -2.39 -0.02 1.15 16 21 H 0.06 1.56 6.45 -2.38 -0.02 1.55 16 22 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.03 1.14 7.29 -2.39 -0.02 1.12 16 25 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 27 H 0.04 1.67 8.00 -2.38 -0.02 1.65 16 28 H 0.08 2.35 5.58 -2.39 -0.01 2.34 16 29 H 0.04 1.44 7.75 -2.39 -0.02 1.42 16 30 H 0.08 3.42 5.85 -2.39 -0.01 3.41 16 31 H 0.06 2.86 8.05 -2.38 -0.02 2.84 16 32 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 Total: -1.00 -62.03 250.64 6.37 -55.66 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 1.07 Total: 10.42 kcal Atomic # 6 Polarization: -59.57 SS G_CDS: 2.99 Total: -56.58 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.28 Total: -56.19 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -62.03 6.37 -55.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260418120.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.210 kcal (2) G-P(sol) polarization free energy of solvation -62.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds