Wall clock time and date at job start Mon Mar 30 2020 02:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30084 * 121.56331 * 2 1 4 4 S 1.69596 * 107.15333 * 179.72718 * 3 2 1 5 5 C 1.72047 * 95.70646 * 359.97438 * 4 3 2 6 6 C 1.35143 * 105.50394 * 0.02562 * 5 4 3 7 7 C 1.50696 * 122.62332 * 180.02562 * 6 5 4 8 8 C 1.50694 * 109.46983 * 264.97574 * 7 6 5 9 9 H 1.08002 * 120.00184 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00063 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99982 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00133 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46798 * 60.00338 * 12 10 8 14 14 H 1.48498 * 109.47376 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47311 * 300.00488 * 12 10 8 16 16 H 1.08996 * 109.47172 * 90.02478 * 1 2 3 17 17 H 1.09000 * 109.47349 * 210.03262 * 1 2 3 18 18 H 1.09003 * 109.46916 * 330.02828 * 1 2 3 19 19 H 1.07999 * 127.25214 * 179.97438 * 5 4 3 20 20 H 1.09003 * 109.47322 * 24.97487 * 7 6 5 21 21 H 1.09001 * 109.47274 * 144.97069 * 7 6 5 22 22 H 0.97008 * 119.99717 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1878 1.1084 0.0000 4 16 3.8304 0.6864 0.0077 5 6 3.5701 -1.0143 0.0117 6 6 2.2282 -1.1743 0.0063 7 6 1.5717 -2.5308 0.0080 8 6 1.2472 -2.9336 -1.4074 9 1 1.4915 -2.2732 -2.2263 10 6 0.6385 -4.1453 -1.6570 11 7 0.3406 -4.9493 -0.6598 12 14 0.2356 -4.6443 -3.4115 13 1 1.4865 -4.7001 -4.2098 14 1 -0.4100 -5.9816 -3.4099 15 1 -0.6893 -3.6482 -4.0095 16 1 -0.3633 -0.0004 -1.0276 17 1 -0.3634 -0.8897 0.5143 18 1 -0.3633 0.8903 0.5134 19 1 4.3209 -1.7906 0.0165 20 1 2.2501 -3.2622 0.4474 21 1 0.6534 -2.4893 0.5937 22 1 -0.0874 -5.8019 -0.8355 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260428999.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:53 Heat of formation + Delta-G solvation = 22.044330 kcal Electronic energy + Delta-G solvation = -8865.882072 eV Core-core repulsion = 7126.112891 eV Total energy + Delta-G solvation = -1739.769181 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 183.041 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.67710 -33.33893 -31.29756 -29.46655 -27.10406 -23.48334 -21.59456 -18.45417 -16.97900 -16.35507 -14.75580 -14.18687 -14.01302 -13.04443 -12.36534 -12.05266 -11.79708 -11.66966 -11.24364 -10.92580 -10.83818 -10.43829 -10.09522 -9.66431 -9.47542 -8.76836 -8.47409 -7.70784 -6.10474 -4.14747 1.40736 2.24078 2.48607 3.22754 3.28332 3.33084 3.37982 4.39577 5.23978 5.34368 5.76438 5.92086 6.10194 6.17203 6.48742 6.57720 6.80448 7.28455 7.45768 7.66807 7.84695 8.23269 8.89175 9.49550 10.99090 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.061093 B = 0.011777 C = 0.011364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.204441 B = 2376.976953 C = 2463.433583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.130 3.870 3 N -0.475 5.475 4 S 0.169 5.831 5 C -0.214 4.214 6 C -0.116 4.116 7 C 0.076 3.924 8 C -0.514 4.514 9 H 0.055 0.945 10 C 0.062 3.938 11 N -0.893 5.893 12 Si 0.895 3.105 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.275 1.275 16 H 0.082 0.918 17 H 0.089 0.911 18 H 0.064 0.936 19 H 0.175 0.825 20 H 0.030 0.970 21 H 0.036 0.964 22 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.758 6.160 1.181 6.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.049 4.049 3 N -0.296 5.296 4 S 0.323 5.677 5 C -0.361 4.361 6 C -0.131 4.131 7 C 0.037 3.963 8 C -0.552 4.552 9 H 0.073 0.927 10 C -0.140 4.140 11 N -0.532 5.532 12 Si 0.722 3.278 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.201 1.201 16 H 0.101 0.899 17 H 0.108 0.892 18 H 0.083 0.917 19 H 0.193 0.807 20 H 0.048 0.952 21 H 0.054 0.946 22 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.606 8.054 1.226 8.909 hybrid contribution -0.913 -2.108 -1.039 2.521 sum 2.693 5.946 0.187 6.530 Atomic orbital electron populations 1.20534 0.86691 1.03054 1.03689 1.21548 0.99132 0.88212 0.95980 1.76656 0.99692 1.26620 1.26599 1.83509 1.12305 0.99919 1.71919 1.26165 1.00029 1.01026 1.08906 1.20799 0.92339 0.99645 1.00365 1.18049 0.95428 0.84924 0.97930 1.20976 1.39646 1.02825 0.91756 0.92666 1.24972 0.95539 0.96320 0.97198 1.69937 1.41837 1.10526 1.30860 0.86607 0.78717 0.77716 0.84731 1.20219 1.21183 1.20094 0.89923 0.89200 0.91712 0.80745 0.95151 0.94602 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 9.95 36.00 0.36 -1.03 14 2 C 0.13 2.66 6.72 -83.49 -0.56 2.10 14 3 N -0.47 -9.49 12.05 32.02 0.39 -9.11 14 4 S 0.17 3.00 23.72 -107.50 -2.55 0.45 14 5 C -0.21 -4.13 11.18 29.63 0.33 -3.79 14 6 C -0.12 -2.51 5.02 -105.88 -0.53 -3.04 14 7 C 0.08 1.88 4.82 -29.04 -0.14 1.74 14 8 C -0.51 -13.83 9.09 -34.44 -0.31 -14.14 14 9 H 0.06 1.50 7.74 -52.49 -0.41 1.09 14 10 C 0.06 1.68 5.46 -17.82 -0.10 1.58 14 11 N -0.89 -25.40 13.29 55.43 0.74 -24.66 14 12 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 14 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 14 14 H -0.29 -6.63 7.11 56.52 0.40 -6.23 14 15 H -0.28 -6.36 7.11 56.52 0.40 -5.95 14 16 H 0.08 1.44 8.14 -51.93 -0.42 1.02 14 17 H 0.09 1.62 6.44 -51.93 -0.33 1.28 14 18 H 0.06 0.99 8.14 -51.93 -0.42 0.57 14 19 H 0.18 3.00 8.06 -52.49 -0.42 2.58 14 20 H 0.03 0.78 8.10 -51.93 -0.42 0.36 14 21 H 0.04 0.90 6.56 -51.93 -0.34 0.56 14 22 H 0.26 7.12 8.31 -40.82 -0.34 6.78 14 LS Contribution 213.63 15.07 3.22 3.22 Total: -1.00 -28.63 213.63 -6.09 -34.72 By element: Atomic # 1 Polarization: -2.08 SS G_CDS: -1.90 Total: -3.98 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: -0.95 Total: -16.57 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 1.12 Total: -33.77 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -2.55 Total: 0.45 kcal Total LS contribution 3.22 Total: 3.22 kcal Total: -28.63 -6.09 -34.72 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260428999.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.761 kcal (2) G-P(sol) polarization free energy of solvation -28.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds