Wall clock time and date at job start Mon Mar 30 2020 01:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46613 * 2 1 4 4 C 1.50696 * 109.47154 * 119.99583 * 2 1 3 5 5 H 1.08001 * 120.00153 * 114.36513 * 4 2 1 6 6 C 1.37885 * 120.00259 * 294.36486 * 4 2 1 7 7 N 1.31513 * 120.00188 * 156.86087 * 6 4 2 8 8 Si 1.86796 * 119.99633 * 336.86757 * 6 4 2 9 9 H 1.48502 * 109.46942 * 179.97438 * 8 6 4 10 10 H 1.48500 * 109.46965 * 299.99305 * 8 6 4 11 11 H 1.48501 * 109.47588 * 59.99645 * 8 6 4 12 12 N 1.46495 * 109.47152 * 239.99578 * 2 1 3 13 13 C 1.37002 * 120.00071 * 85.00224 * 12 2 1 14 14 N 1.28723 * 124.49188 * 0.02562 * 13 12 2 15 15 C 1.46735 * 112.31958 * 179.89396 * 14 13 12 16 16 C 1.54637 * 105.15647 * 16.32504 * 15 14 13 17 17 C 1.51258 * 124.49754 * 179.72342 * 13 12 2 18 18 H 1.09007 * 109.47303 * 173.10545 * 1 2 3 19 19 H 1.09000 * 109.47182 * 293.10481 * 1 2 3 20 20 H 1.09001 * 109.47137 * 53.11102 * 1 2 3 21 21 H 0.96995 * 119.99980 * 354.93333 * 7 6 4 22 22 H 0.96998 * 120.00561 * 264.99662 * 12 2 1 23 23 H 1.09002 * 110.30132 * 135.23991 * 15 14 13 24 24 H 1.09001 * 110.30788 * 257.30293 * 15 14 13 25 25 H 1.09000 * 111.11788 * 93.68907 * 16 15 14 26 26 H 1.08996 * 111.12023 * 217.79174 * 16 15 14 27 27 H 1.09005 * 110.54732 * 282.55633 * 17 13 12 28 28 H 1.08997 * 110.54854 * 45.36385 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5761 -1.6384 1.1341 6 6 1.7977 -0.1753 2.4795 7 7 1.8075 -0.9527 3.5402 8 14 1.4659 1.6536 2.6647 9 1 1.2458 1.9740 4.0980 10 1 2.6315 2.4219 2.1586 11 1 0.2559 2.0187 1.8850 12 7 2.0183 -0.6907 -1.1961 13 6 2.1492 -0.0073 -2.3763 14 7 1.8695 1.2395 -2.5315 15 6 2.1108 1.6980 -3.9044 16 6 2.2166 0.4071 -4.7491 17 6 2.6478 -0.6162 -3.6680 18 1 -0.3634 -1.0203 -0.1234 19 1 -0.3633 0.4033 0.9452 20 1 -0.3633 0.6169 -0.8219 21 1 1.9064 -1.9121 3.4375 22 1 2.2491 -1.6318 -1.1525 23 1 1.2776 2.3095 -4.2508 24 1 3.0413 2.2632 -3.9564 25 1 1.2528 0.1423 -5.1841 26 1 2.9798 0.5043 -5.5211 27 1 3.7326 -0.7213 -3.6478 28 1 2.1722 -1.5809 -3.8448 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260460031.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:01 Heat of formation + Delta-G solvation = 13.749823 kcal Electronic energy + Delta-G solvation = -10980.516883 eV Core-core repulsion = 9031.186911 eV Total energy + Delta-G solvation = -1949.329972 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.80096 -35.45781 -32.51027 -29.82070 -29.42020 -26.57149 -24.64888 -21.42537 -20.48116 -18.48157 -17.48384 -15.67793 -15.55432 -14.62430 -13.48974 -13.31492 -12.80082 -12.61138 -12.51246 -12.07371 -11.83659 -11.23985 -11.13358 -11.05926 -10.39719 -10.10511 -9.86502 -9.58061 -8.99745 -8.64311 -8.21870 -7.16367 -6.51992 -4.12851 3.22047 3.46822 3.50952 3.67441 4.15486 4.50607 4.74160 4.91880 5.08391 5.18754 5.62347 5.81196 5.91623 5.93935 6.07038 6.31208 6.34492 6.54062 6.78001 6.82984 7.16556 7.44001 7.78326 7.90222 8.30993 8.55836 8.80634 9.07080 9.52749 10.85220 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.065294 B = 0.011473 C = 0.010565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.729932 B = 2439.874095 C = 2649.548612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.255 3.745 3 H 0.041 0.959 4 C -0.623 4.623 5 H 0.060 0.940 6 C 0.044 3.956 7 N -0.894 5.894 8 Si 1.035 2.965 9 H -0.285 1.285 10 H -0.281 1.281 11 H -0.274 1.274 12 N -0.687 5.687 13 C 0.381 3.619 14 N -0.611 5.611 15 C 0.049 3.951 16 C -0.148 4.148 17 C -0.133 4.133 18 H 0.039 0.961 19 H 0.055 0.945 20 H 0.030 0.970 21 H 0.269 0.731 22 H 0.398 0.602 23 H 0.069 0.931 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.341 1.220 -12.703 12.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.152 3.848 3 H 0.058 0.942 4 C -0.661 4.661 5 H 0.078 0.922 6 C -0.163 4.163 7 N -0.527 5.527 8 Si 0.863 3.137 9 H -0.210 1.210 10 H -0.207 1.207 11 H -0.199 1.199 12 N -0.321 5.321 13 C 0.100 3.900 14 N -0.342 5.342 15 C -0.083 4.083 16 C -0.187 4.187 17 C -0.174 4.174 18 H 0.058 0.942 19 H 0.073 0.927 20 H 0.049 0.951 21 H 0.079 0.921 22 H 0.232 0.768 23 H 0.087 0.913 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.103 0.897 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.305 3.364 -11.005 11.512 hybrid contribution 0.716 -2.230 -1.812 2.961 sum 0.411 1.134 -12.817 12.874 Atomic orbital electron populations 1.22419 0.99441 0.99619 0.99836 1.18895 0.90091 0.93877 0.81954 0.94164 1.22075 1.41635 1.11127 0.91268 0.92168 1.25632 0.93030 1.05883 0.91731 1.70868 1.43579 1.06373 1.31834 0.84158 0.77792 0.75773 0.76010 1.21044 1.20718 1.19942 1.44281 1.69184 1.11927 1.06699 1.22046 0.89691 0.90971 0.87312 1.73204 1.31786 1.11605 1.17569 1.22757 1.00413 0.96380 0.88721 1.23017 1.01458 0.96542 0.97671 1.22298 1.01922 1.00141 0.93069 0.94221 0.92662 0.95112 0.92070 0.76783 0.91293 0.92128 0.91121 0.90846 0.89735 0.90431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.21 37.16 0.34 -3.28 15 2 C 0.26 6.31 2.26 -69.09 -0.16 6.16 15 3 H 0.04 1.08 6.29 -51.93 -0.33 0.75 15 4 C -0.62 -17.32 8.95 -34.44 -0.31 -17.62 15 5 H 0.06 1.75 7.96 -52.49 -0.42 1.33 15 6 C 0.04 1.27 5.19 -17.82 -0.09 1.18 15 7 N -0.89 -26.99 13.70 55.43 0.76 -26.23 15 8 Si 1.04 25.66 26.44 -169.99 -4.49 21.16 15 9 H -0.28 -6.99 7.11 56.52 0.40 -6.59 15 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 11 H -0.27 -6.43 6.15 56.52 0.35 -6.09 15 12 N -0.69 -14.45 5.16 -52.65 -0.27 -14.72 15 13 C 0.38 7.28 7.88 -154.77 -1.22 6.06 15 14 N -0.61 -12.49 10.67 -56.85 -0.61 -13.10 15 15 C 0.05 0.77 7.81 -3.05 -0.02 0.75 15 16 C -0.15 -1.88 7.27 -24.83 -0.18 -2.06 15 17 C -0.13 -1.87 6.90 -26.57 -0.18 -2.06 15 18 H 0.04 0.89 8.14 -51.93 -0.42 0.46 15 19 H 0.05 1.33 5.48 -51.93 -0.28 1.05 15 20 H 0.03 0.68 8.14 -51.93 -0.42 0.26 15 21 H 0.27 8.04 8.73 -40.82 -0.36 7.68 15 22 H 0.40 7.60 8.64 -40.82 -0.35 7.25 15 23 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 25 H 0.07 0.85 8.14 -51.93 -0.42 0.42 15 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 15 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 15 LS Contribution 234.04 15.07 3.53 3.53 Total: -1.00 -30.63 234.04 -6.88 -37.50 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -3.97 Total: 2.73 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -1.82 Total: -10.87 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.12 Total: -54.05 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -4.49 Total: 21.16 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -30.63 -6.88 -37.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260460031.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.254 kcal (2) G-P(sol) polarization free energy of solvation -30.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds