Wall clock time and date at job start Mon Mar 30 2020 01:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47487 * 2 1 4 4 C 1.53005 * 109.47055 * 120.00189 * 2 1 3 5 5 C 1.52997 * 109.47511 * 64.99550 * 4 2 1 6 6 C 1.52996 * 109.47365 * 179.97438 * 5 4 2 7 7 H 1.09002 * 115.54951 * 330.58504 * 6 5 4 8 8 C 1.53002 * 117.49888 * 116.25530 * 6 5 4 9 9 C 1.53000 * 117.50107 * 184.91292 * 6 5 4 10 10 H 1.08999 * 117.49959 * 144.99502 * 9 6 5 11 11 C 1.50706 * 117.49681 * 359.97438 * 9 6 5 12 12 H 1.08005 * 119.99894 * 359.97438 * 11 9 6 13 13 C 1.37870 * 119.99966 * 179.97438 * 11 9 6 14 14 N 1.31515 * 119.99989 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 120.00146 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46873 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47396 * 119.99839 * 15 13 11 18 18 H 1.48500 * 109.47385 * 240.00234 * 15 13 11 19 19 H 1.09000 * 109.47656 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47256 * 300.00366 * 1 2 3 21 21 H 1.09002 * 109.47320 * 60.00039 * 1 2 3 22 22 H 1.09001 * 109.47256 * 239.99634 * 2 1 3 23 23 H 1.09003 * 109.47131 * 180.02562 * 3 2 1 24 24 H 1.08998 * 109.47026 * 299.99560 * 3 2 1 25 25 H 1.08994 * 109.47438 * 60.00205 * 3 2 1 26 26 H 1.09002 * 109.47130 * 304.99373 * 4 2 1 27 27 H 1.09004 * 109.47245 * 184.99790 * 4 2 1 28 28 H 1.09002 * 109.47067 * 59.99785 * 5 4 2 29 29 H 1.09004 * 109.47062 * 300.00352 * 5 4 2 30 30 H 1.09000 * 117.49996 * 215.00804 * 8 6 5 31 31 H 1.08998 * 117.49632 * 359.97438 * 8 6 5 32 32 H 0.97008 * 119.99755 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6351 -2.1955 1.1881 6 6 2.1457 -2.9169 2.4370 7 1 3.0566 -2.5097 2.8757 8 6 1.1023 -3.5018 3.3910 9 6 1.9417 -4.4314 2.5110 10 1 2.7185 -5.0206 2.9984 11 6 1.2527 -5.0984 1.3484 12 1 0.9235 -4.5090 0.5054 13 6 1.0427 -6.4609 1.3610 14 7 1.4432 -7.1786 2.3878 15 14 0.1894 -7.2878 -0.0804 16 1 -0.1592 -6.2670 -1.1010 17 1 1.0980 -8.2973 -0.6808 18 1 -1.0486 -7.9565 0.3946 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 3.1300 1.4423 -0.0005 24 1 1.6768 1.9562 -0.8900 25 1 1.6768 1.9563 0.8899 26 1 1.6054 -0.2618 2.1370 27 1 3.1263 -0.6444 1.2952 28 1 2.0697 -2.6551 0.3003 29 1 0.5488 -2.2724 1.1422 30 1 1.3268 -3.4794 4.4574 31 1 0.0523 -3.3724 3.1291 32 1 1.2951 -8.1372 2.3967 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260461498.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:43 Heat of formation + Delta-G solvation = -15.400985 kcal Electronic energy + Delta-G solvation = -10942.889321 eV Core-core repulsion = 9095.835618 eV Total energy + Delta-G solvation = -1847.053703 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.30919 -35.50325 -32.16554 -29.56051 -26.98670 -25.48516 -23.37248 -20.40443 -19.60698 -19.04698 -16.08602 -15.07932 -14.59447 -13.89210 -13.85590 -13.56117 -12.70916 -12.43783 -12.03056 -11.48206 -11.46680 -11.16118 -10.99581 -10.77573 -10.57133 -10.41238 -10.17048 -10.05559 -9.96279 -9.26012 -8.90302 -8.32280 -8.10289 -6.03906 -4.01549 3.29231 3.37238 3.41373 4.42289 5.03663 5.12499 5.15334 5.22131 5.57050 5.74609 5.83749 5.84753 5.98319 6.01113 6.09313 6.16824 6.32728 6.41825 6.44819 6.56647 6.63080 6.79435 6.87049 6.99438 7.07326 7.10774 7.50138 7.69882 7.94299 8.50919 9.00429 9.57938 11.07358 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.047888 B = 0.009584 C = 0.008458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.555821 B = 2920.725964 C = 3309.702558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 C -0.145 4.145 4 C -0.111 4.111 5 C -0.071 4.071 6 C -0.190 4.190 7 H 0.074 0.926 8 C -0.211 4.211 9 C 0.032 3.968 10 H 0.073 0.927 11 C -0.489 4.489 12 H 0.063 0.937 13 C 0.063 3.937 14 N -0.889 5.889 15 Si 0.893 3.107 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.283 1.283 19 H 0.062 0.938 20 H 0.050 0.950 21 H 0.046 0.954 22 H 0.067 0.933 23 H 0.051 0.949 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.250 11.477 -3.582 12.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.203 4.203 4 C -0.149 4.149 5 C -0.108 4.108 6 C -0.208 4.208 7 H 0.092 0.908 8 C -0.249 4.249 9 C 0.014 3.986 10 H 0.091 0.909 11 C -0.526 4.526 12 H 0.081 0.919 13 C -0.139 4.139 14 N -0.527 5.527 15 Si 0.720 3.280 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.210 1.210 19 H 0.081 0.919 20 H 0.070 0.930 21 H 0.065 0.935 22 H 0.086 0.914 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.247 11.284 -3.519 11.823 hybrid contribution -0.486 -0.485 -0.542 0.875 sum -0.733 10.799 -4.061 11.560 Atomic orbital electron populations 1.21879 0.95562 1.02270 1.00812 1.21148 0.95849 0.95553 0.99234 1.21841 1.00681 0.96609 1.01118 1.21688 0.99993 0.96665 0.96545 1.20975 1.00298 0.92117 0.97425 1.22269 0.99126 1.00877 0.98567 0.90801 1.23065 0.95875 1.11393 0.94547 1.19961 0.96777 0.85800 0.96108 0.90937 1.20751 1.36949 0.92023 1.02888 0.91915 1.25053 0.95433 0.97483 0.95917 1.69988 1.46438 1.06451 1.29798 0.86524 0.79340 0.79528 0.82574 1.19597 1.20911 1.20950 0.91914 0.93050 0.93502 0.91434 0.93002 0.93277 0.93008 0.92647 0.92756 0.92271 0.92283 0.92209 0.90799 0.92970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.95 37.15 0.33 -1.63 16 2 C -0.10 -1.35 2.92 -90.62 -0.26 -1.62 16 3 C -0.15 -1.66 9.19 37.15 0.34 -1.32 16 4 C -0.11 -1.74 4.64 -26.73 -0.12 -1.87 16 5 C -0.07 -1.38 3.89 -26.73 -0.10 -1.48 16 6 C -0.19 -4.17 5.73 -90.62 -0.52 -4.68 16 7 H 0.07 1.52 8.08 -51.93 -0.42 1.10 16 8 C -0.21 -4.95 9.88 -26.69 -0.26 -5.22 16 9 C 0.03 0.84 5.58 -91.73 -0.51 0.33 16 10 H 0.07 2.06 7.90 -51.93 -0.41 1.65 16 11 C -0.49 -13.73 8.71 -34.44 -0.30 -14.03 16 12 H 0.06 1.72 6.57 -52.48 -0.34 1.37 16 13 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 14 N -0.89 -26.49 13.13 55.43 0.73 -25.76 16 15 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H 0.06 0.92 6.56 -51.93 -0.34 0.58 16 20 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 22 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.06 1.21 7.74 -51.93 -0.40 0.81 16 29 H 0.06 1.19 6.30 -51.93 -0.33 0.86 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.07 1.74 8.03 -51.93 -0.42 1.33 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 261.72 15.07 3.94 3.94 Total: -1.00 -28.75 261.72 -7.46 -36.21 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -5.60 Total: -1.06 kcal Atomic # 6 Polarization: -28.29 SS G_CDS: -1.51 Total: -29.80 kcal Atomic # 7 Polarization: -26.49 SS G_CDS: 0.73 Total: -25.76 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.75 -7.46 -36.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260461498.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.813 kcal (2) G-P(sol) polarization free energy of solvation -28.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds