Wall clock time and date at job start Mon Mar 30 2020 02:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47111 * 2 1 4 4 C 1.50699 * 109.47033 * 120.00101 * 2 1 3 5 5 H 1.07997 * 119.99881 * 84.94240 * 4 2 1 6 6 C 1.37881 * 120.00038 * 264.93634 * 4 2 1 7 7 N 1.31511 * 120.00161 * 179.04478 * 6 4 2 8 8 Si 1.86804 * 119.99894 * 359.04301 * 6 4 2 9 9 H 1.48500 * 109.47169 * 268.60823 * 8 6 4 10 10 H 1.48498 * 109.47059 * 28.60622 * 8 6 4 11 11 H 1.48497 * 109.47339 * 148.60723 * 8 6 4 12 12 C 1.50702 * 109.47053 * 240.00138 * 2 1 3 13 13 C 1.40984 * 126.74318 * 324.71016 * 12 2 1 14 14 C 1.36382 * 103.92914 * 179.85591 * 13 12 2 15 15 O 1.35432 * 126.86094 * 180.12807 * 14 13 12 16 16 O 1.34172 * 106.27699 * 0.40276 * 14 13 12 17 17 N 1.20907 * 111.50092 * 359.72233 * 16 14 13 18 18 H 1.08995 * 109.47247 * 185.59051 * 1 2 3 19 19 H 1.09005 * 109.46630 * 305.59283 * 1 2 3 20 20 H 1.09004 * 109.46849 * 65.58840 * 1 2 3 21 21 H 0.96999 * 119.99893 * 180.02562 * 7 6 4 22 22 H 1.08003 * 128.03782 * 359.96972 * 13 12 2 23 23 H 0.96700 * 114.00052 * 180.35399 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.1345 -1.7855 1.2293 6 6 2.3615 0.0122 2.3576 7 7 2.7819 -0.6093 3.4377 8 14 2.2102 1.8741 2.3507 9 1 3.5011 2.4740 1.9279 10 1 1.1416 2.2803 1.4029 11 1 1.8676 2.3480 3.7157 12 6 2.0323 -0.7104 -1.2305 13 6 1.4440 -1.8269 -1.8590 14 6 2.2682 -2.0809 -2.9155 15 8 2.1296 -3.0648 -3.8358 16 8 3.2471 -1.1652 -2.8575 17 7 3.0989 -0.4169 -1.9195 18 1 -0.3633 -1.0227 0.1001 19 1 -0.3633 0.5982 0.8357 20 1 -0.3633 0.4247 -0.9358 21 1 3.0131 -0.1010 4.2308 22 1 0.5478 -2.3567 -1.5718 23 1 2.8273 -3.0784 -4.5052 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260474708.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:33 Heat of formation + Delta-G solvation = -15.679019 kcal Electronic energy + Delta-G solvation = -10877.500069 eV Core-core repulsion = 8693.342210 eV Total energy + Delta-G solvation = -2184.157859 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -45.79616 -38.93825 -37.17037 -34.46527 -32.38731 -31.45610 -27.27781 -25.13301 -23.34299 -22.14831 -19.40943 -19.18549 -18.58996 -17.08215 -16.43674 -16.20222 -14.99712 -14.63768 -14.53898 -14.26378 -14.09889 -13.26638 -12.86620 -12.58898 -12.19734 -11.88668 -11.74150 -11.41917 -10.78928 -10.63579 -9.71318 -8.32936 -6.39119 0.69817 1.34747 1.36396 1.46868 1.48532 1.72973 2.32711 2.97227 3.10266 3.41591 4.21430 4.48293 4.59844 4.68273 4.88842 4.98220 5.17642 5.29526 5.56050 5.60740 6.22731 6.32334 6.65460 7.25911 7.51899 8.83612 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.065074 B = 0.011968 C = 0.011910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.179094 B = 2339.033846 C = 2350.334977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.072 3.928 3 H 0.044 0.956 4 C -0.511 4.511 5 H 0.033 0.967 6 C 0.017 3.983 7 N -0.944 5.944 8 Si 0.938 3.062 9 H -0.276 1.276 10 H -0.234 1.234 11 H -0.279 1.279 12 C 0.072 3.928 13 C -0.272 4.272 14 C 0.171 3.829 15 O -0.405 6.405 16 O 0.059 5.941 17 N -0.406 5.406 18 H 0.056 0.944 19 H 0.051 0.949 20 H 0.056 0.944 21 H 0.269 0.731 22 H 0.182 0.818 23 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.094 -0.266 -13.170 13.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.052 3.948 3 H 0.063 0.937 4 C -0.549 4.549 5 H 0.051 0.949 6 C -0.181 4.181 7 N -0.584 5.584 8 Si 0.761 3.239 9 H -0.202 1.202 10 H -0.157 1.157 11 H -0.204 1.204 12 C -0.086 4.086 13 C -0.294 4.294 14 C 0.061 3.939 15 O -0.212 6.212 16 O -0.001 6.001 17 N -0.124 5.124 18 H 0.075 0.925 19 H 0.071 0.929 20 H 0.075 0.925 21 H 0.078 0.922 22 H 0.199 0.801 23 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -2.606 0.432 -12.681 12.953 hybrid contribution 0.154 -0.100 0.203 0.274 sum -2.452 0.331 -12.478 12.721 Atomic orbital electron populations 1.21848 0.94325 1.01814 1.00516 1.17746 0.95007 0.94743 0.87277 0.93746 1.20935 1.44042 0.93823 0.96120 0.94886 1.25888 0.93726 1.03710 0.94738 1.70024 1.46175 1.38198 1.03977 0.85870 0.79977 0.79728 0.78333 1.20153 1.15732 1.20439 1.23753 0.91183 0.96237 0.97413 1.21551 1.06601 1.03274 0.98009 1.22277 0.89847 0.88588 0.93142 1.85206 1.52925 1.43194 1.39847 1.84838 1.42585 1.33411 1.39295 1.73816 1.21153 1.15785 1.01659 0.92495 0.92946 0.92479 0.92239 0.80081 0.70673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.04 8.68 71.98 0.62 -4.41 14 2 C 0.07 3.44 2.34 -12.29 -0.03 3.41 14 3 H 0.04 2.14 5.33 -2.39 -0.01 2.13 14 4 C -0.51 -29.43 8.85 25.60 0.23 -29.21 14 5 H 0.03 2.12 8.06 -2.91 -0.02 2.10 14 6 C 0.02 1.01 5.47 84.66 0.46 1.47 14 7 N -0.94 -59.08 13.96 21.45 0.30 -58.78 14 8 Si 0.94 44.07 26.83 68.60 1.84 45.91 14 9 H -0.28 -12.94 7.11 99.48 0.71 -12.23 14 10 H -0.23 -9.93 6.41 99.48 0.64 -9.30 14 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 14 12 C 0.07 3.18 6.18 43.46 0.27 3.44 14 13 C -0.27 -10.08 10.40 22.51 0.23 -9.84 14 14 C 0.17 5.28 8.74 67.39 0.59 5.87 14 15 O -0.41 -8.37 13.63 -65.22 -0.89 -9.26 14 16 O 0.06 2.07 11.21 92.45 1.04 3.11 14 17 N -0.41 -17.67 12.06 -49.08 -0.59 -18.27 14 18 H 0.06 2.18 7.79 -2.39 -0.02 2.16 14 19 H 0.05 2.05 7.63 -2.38 -0.02 2.03 14 20 H 0.06 1.92 8.14 -2.39 -0.02 1.90 14 21 H 0.27 15.65 8.31 -92.71 -0.77 14.88 14 22 H 0.18 6.07 7.83 -2.91 -0.02 6.05 14 23 H 0.43 3.37 9.06 -74.06 -0.67 2.70 14 Total: -1.00 -70.68 211.13 4.57 -66.11 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: 0.50 Total: 0.44 kcal Atomic # 6 Polarization: -31.65 SS G_CDS: 2.38 Total: -29.27 kcal Atomic # 7 Polarization: -76.75 SS G_CDS: -0.29 Total: -77.05 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: 0.15 Total: -6.15 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.84 Total: 45.91 kcal Total: -70.68 4.57 -66.11 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260474708.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.436 kcal (2) G-P(sol) polarization free energy of solvation -70.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds