Wall clock time and date at job start Mon Mar 30 2020 02:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30726 * 1 3 3 Si 1.86803 * 119.99673 * 2 1 4 4 H 1.48505 * 109.46965 * 274.97964 * 3 2 1 5 5 H 1.48495 * 109.47452 * 34.97666 * 3 2 1 6 6 H 1.48499 * 109.47270 * 154.97796 * 3 2 1 7 7 C 1.40015 * 120.00543 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00418 * 185.97851 * 7 2 1 9 9 C 1.41742 * 119.99736 * 5.98175 * 7 2 1 10 10 C 1.47338 * 127.38001 * 174.38264 * 9 7 2 11 11 C 1.36501 * 103.14738 * 180.02562 * 10 9 7 12 12 C 1.47379 * 126.60578 * 180.02562 * 11 10 9 13 13 O 1.21498 * 119.99800 * 359.97438 * 12 11 10 14 14 O 1.34778 * 120.00048 * 179.72508 * 12 11 10 15 15 O 1.34643 * 106.79043 * 0.26215 * 11 10 9 16 16 N 1.20719 * 113.09928 * 359.51670 * 15 11 10 17 17 H 0.96994 * 120.00377 * 0.02562 * 1 2 3 18 18 H 1.07998 * 128.42367 * 359.97438 * 10 9 7 19 19 H 0.96696 * 117.00274 * 179.97438 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 2.3834 2.1073 -1.3949 5 1 1.4952 2.6201 0.8025 6 1 3.5874 1.4123 0.5922 7 6 2.0074 -1.2125 0.0005 8 1 3.0831 -1.2150 0.0980 9 6 1.3046 -2.4368 -0.1268 10 6 1.8777 -3.7875 -0.2602 11 6 0.7740 -4.5859 -0.3473 12 6 0.7594 -6.0522 -0.4952 13 8 1.8056 -6.6675 -0.5515 14 8 -0.4144 -6.7110 -0.5630 15 8 -0.2989 -3.7754 -0.2774 16 7 -0.0055 -2.6111 -0.1520 17 1 -0.4850 0.8400 -0.0004 18 1 2.9183 -4.0758 -0.2842 19 1 -0.3734 -7.6722 -0.6603 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260491966.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:01 Heat of formation + Delta-G solvation = -43.290464 kcal Electronic energy + Delta-G solvation = -10459.711410 eV Core-core repulsion = 8138.523135 eV Total energy + Delta-G solvation = -2321.188276 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 183.036 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.75085 -39.55661 -35.80590 -34.06112 -31.64435 -30.42121 -26.32757 -24.03247 -21.49924 -20.22999 -18.32262 -17.29799 -16.11685 -16.04214 -14.96453 -14.83575 -14.33470 -13.33632 -12.81775 -12.24910 -11.37628 -11.32572 -11.31466 -10.97833 -10.54563 -10.21454 -9.77692 -9.27942 -8.63800 -8.24412 -6.68735 -4.64415 1.68220 2.97544 3.08640 3.12623 3.21680 3.49701 3.85283 3.94498 4.60311 5.18770 5.87439 6.14124 6.24607 6.63581 6.73314 6.92105 7.20445 8.13881 8.19930 8.40427 8.77039 10.19521 10.32416 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.109511 B = 0.010429 C = 0.009562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 255.620158 B = 2684.087174 C = 2927.516087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.069 3.931 3 Si 0.920 3.080 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.445 4.445 8 H 0.091 0.909 9 C 0.155 3.845 10 C -0.188 4.188 11 C -0.120 4.120 12 C 0.580 3.420 13 O -0.516 6.516 14 O -0.505 6.505 15 O 0.070 5.930 16 N -0.378 5.378 17 H 0.279 0.721 18 H 0.157 0.843 19 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.987 -4.961 -0.646 5.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.152 4.152 3 Si 0.744 3.256 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.483 4.483 8 H 0.109 0.891 9 C 0.012 3.988 10 C -0.212 4.212 11 C -0.183 4.183 12 C 0.424 3.576 13 O -0.405 6.405 14 O -0.316 6.316 15 O 0.012 5.988 16 N -0.100 5.100 17 H 0.090 0.910 18 H 0.175 0.825 19 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -0.011 -3.878 -0.541 3.916 hybrid contribution 1.222 -0.203 -0.111 1.244 sum 1.212 -4.081 -0.652 4.307 Atomic orbital electron populations 1.69837 1.07266 1.28935 1.33764 1.25893 0.94950 1.01205 0.93152 0.86110 0.80189 0.80317 0.78979 1.19508 1.20198 1.18513 1.18717 0.94577 0.87494 1.47467 0.89118 1.21668 0.87597 0.92512 0.97049 1.23844 0.98199 0.92637 1.06568 1.22129 0.90919 0.89239 1.16050 1.19300 0.80857 0.85773 0.71625 1.90879 1.33594 1.67878 1.48171 1.84709 1.34703 1.26993 1.85179 1.84887 1.31777 1.12890 1.69250 1.74756 1.15855 0.91168 1.28240 0.91001 0.82532 0.73383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.28 12.06 55.55 0.67 -20.61 13 2 C 0.07 1.79 5.49 -17.36 -0.10 1.70 13 3 Si 0.92 18.96 29.56 -169.99 -5.03 13.93 13 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 13 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 13 6 H -0.26 -5.22 7.11 56.52 0.40 -4.81 13 7 C -0.44 -11.98 9.48 -37.58 -0.36 -12.33 13 8 H 0.09 2.25 7.85 -52.49 -0.41 1.83 13 9 C 0.16 4.27 6.99 -82.68 -0.58 3.69 13 10 C -0.19 -4.47 11.16 -36.51 -0.41 -4.88 13 11 C -0.12 -2.73 7.33 -36.49 -0.27 -3.00 13 12 C 0.58 11.05 8.33 34.45 0.29 11.33 13 13 O -0.52 -10.33 17.68 -19.26 -0.34 -10.67 13 14 O -0.51 -7.59 13.44 -41.62 -0.56 -8.15 13 15 O 0.07 1.79 11.12 15.58 0.17 1.96 13 16 N -0.38 -10.76 10.48 33.36 0.35 -10.41 13 17 H 0.28 6.98 8.29 -40.82 -0.34 6.65 13 18 H 0.16 3.30 8.06 -52.49 -0.42 2.87 13 19 H 0.41 3.56 9.11 45.56 0.42 3.97 13 LS Contribution 197.76 15.07 2.98 2.98 Total: -1.00 -31.50 197.76 -2.72 -34.22 By element: Atomic # 1 Polarization: -0.21 SS G_CDS: 0.45 Total: 0.24 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -1.42 Total: -3.49 kcal Atomic # 7 Polarization: -32.04 SS G_CDS: 1.02 Total: -31.02 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.73 Total: -16.86 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 2.98 Total: 2.98 kcal Total: -31.50 -2.72 -34.22 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260491966.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.066 kcal (2) G-P(sol) polarization free energy of solvation -31.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds