Wall clock time and date at job start Mon Mar 30 2020 02:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35706 * 117.00447 * 2 1 4 4 C 1.41923 * 126.88027 * 179.71253 * 3 2 1 5 5 C 1.35282 * 103.95813 * 180.26245 * 4 3 2 6 6 C 1.50699 * 126.70590 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.47174 * 89.95052 * 6 5 4 8 8 H 1.07999 * 119.99313 * 359.97438 * 7 6 5 9 9 C 1.37869 * 120.00089 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00008 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00133 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46871 * 89.99608 * 11 9 7 13 13 H 1.48497 * 109.47293 * 209.99866 * 11 9 7 14 14 H 1.48498 * 109.46698 * 330.00154 * 11 9 7 15 15 O 1.34082 * 106.57892 * 359.97438 * 5 4 3 16 16 N 1.20905 * 111.72206 * 359.97438 * 15 5 4 17 17 H 1.08999 * 109.46989 * 180.02562 * 1 2 3 18 18 H 1.09005 * 109.46855 * 299.99920 * 1 2 3 19 19 H 1.08992 * 109.47170 * 59.99843 * 1 2 3 20 20 H 1.07996 * 128.02642 * 0.23894 * 4 3 2 21 21 H 1.09004 * 109.47008 * 209.94949 * 6 5 4 22 22 H 1.09002 * 109.47598 * 329.95043 * 6 5 4 23 23 H 0.96998 * 120.00233 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 3.4434 1.4525 0.0057 5 6 3.5397 2.8019 0.0091 6 6 4.8089 3.6144 0.0150 7 6 5.2372 3.8874 -1.4039 8 1 4.6494 3.5099 -2.2274 9 6 6.3795 4.6190 -1.6504 10 7 7.0950 5.0791 -0.6475 11 14 6.9109 4.9568 -3.4091 12 1 6.2961 6.2251 -3.8770 13 1 8.3902 5.0733 -3.4656 14 1 6.4685 3.8405 -4.2829 15 8 2.2851 3.2750 0.0049 16 7 1.4701 2.3819 -0.0009 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5138 -0.8899 20 1 4.2447 0.7285 0.0074 21 1 4.6331 4.5591 0.5297 22 1 5.5929 3.0599 0.5309 23 1 7.8985 5.5941 -0.8209 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260506390.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:36 Heat of formation + Delta-G solvation = -3.582412 kcal Electronic energy + Delta-G solvation = -10614.247006 eV Core-core repulsion = 8430.613695 eV Total energy + Delta-G solvation = -2183.633311 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -45.73181 -39.78730 -35.86992 -34.09037 -33.14628 -29.69355 -28.37788 -25.43435 -24.21277 -22.08309 -19.01560 -18.61011 -18.15656 -17.63103 -16.56801 -16.39716 -15.90331 -14.74058 -14.43676 -14.28777 -13.60511 -13.03845 -12.81101 -12.76840 -12.62942 -12.07567 -11.94003 -11.73304 -10.62936 -10.36532 -10.14307 -8.25833 -6.38822 0.57212 1.35020 1.45204 1.46238 1.57128 1.81722 2.32047 2.44527 3.08726 3.32148 4.05877 4.26095 4.26686 4.31782 4.60396 4.61795 4.97741 5.22316 5.34249 5.66297 5.99748 6.00463 6.68689 7.28322 7.30153 8.84431 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.081410 B = 0.009209 C = 0.008886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.857266 B = 3039.850919 C = 3150.373452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.293 6.293 3 C 0.208 3.792 4 C -0.264 4.264 5 C 0.044 3.956 6 C 0.093 3.907 7 C -0.543 4.543 8 H 0.056 0.944 9 C 0.016 3.984 10 N -0.920 5.920 11 Si 0.968 3.032 12 H -0.273 1.273 13 H -0.276 1.276 14 H -0.268 1.268 15 O 0.068 5.932 16 N -0.439 5.439 17 H 0.140 0.860 18 H 0.057 0.943 19 H 0.054 0.946 20 H 0.189 0.811 21 H 0.032 0.968 22 H 0.054 0.946 23 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.746 -7.272 0.259 10.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.200 6.200 3 C 0.010 3.990 4 C -0.286 4.286 5 C -0.018 4.018 6 C 0.055 3.945 7 C -0.580 4.580 8 H 0.074 0.926 9 C -0.184 4.184 10 N -0.559 5.559 11 Si 0.792 3.208 12 H -0.198 1.198 13 H -0.201 1.201 14 H -0.193 1.193 15 O 0.015 5.985 16 N -0.173 5.173 17 H 0.158 0.842 18 H 0.076 0.924 19 H 0.073 0.927 20 H 0.206 0.794 21 H 0.051 0.949 22 H 0.072 0.928 23 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.739 -7.034 0.308 11.222 hybrid contribution 0.802 -0.053 -0.661 1.041 sum -7.937 -7.087 -0.353 10.646 Atomic orbital electron populations 1.23326 0.75395 1.06038 1.02119 1.86164 1.24226 1.20170 1.89430 1.22152 0.91206 0.86003 0.99631 1.21922 0.94309 0.95762 1.16581 1.25224 0.87745 0.94112 0.94762 1.17870 0.84300 0.94183 0.98163 1.21214 1.09865 1.35350 0.91616 0.92582 1.25788 0.95956 0.94746 1.01898 1.70022 1.16773 1.36256 1.32855 0.85397 0.77570 0.78801 0.79015 1.19797 1.20117 1.19257 1.84723 1.13206 1.30409 1.70205 1.73983 1.16545 0.96871 1.29867 0.84191 0.92416 0.92726 0.79410 0.94936 0.92782 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.73 113.37 1.22 1.80 14 2 O -0.29 -9.48 10.57 -90.26 -0.95 -10.43 14 3 C 0.21 8.03 8.01 85.78 0.69 8.72 14 4 C -0.26 -10.54 11.11 22.50 0.25 -10.29 14 5 C 0.04 1.98 6.67 25.00 0.17 2.15 14 6 C 0.09 4.62 5.54 29.10 0.16 4.79 14 7 C -0.54 -29.47 9.09 25.60 0.23 -29.24 14 8 H 0.06 3.04 7.74 -2.91 -0.02 3.02 14 9 C 0.02 0.87 5.46 84.65 0.46 1.33 14 10 N -0.92 -51.89 13.29 21.44 0.28 -51.60 14 11 Si 0.97 42.34 29.54 68.60 2.03 44.37 14 12 H -0.27 -11.64 7.11 99.48 0.71 -10.93 14 13 H -0.28 -11.64 7.11 99.48 0.71 -10.94 14 14 H -0.27 -11.46 7.11 99.48 0.71 -10.75 14 15 O 0.07 3.03 11.19 71.26 0.80 3.82 14 16 N -0.44 -18.06 11.54 -172.61 -1.99 -20.05 14 17 H 0.14 2.03 8.14 -2.39 -0.02 2.01 14 18 H 0.06 1.31 8.14 -2.38 -0.02 1.29 14 19 H 0.05 1.27 8.14 -2.39 -0.02 1.26 14 20 H 0.19 6.61 8.06 -2.91 -0.02 6.59 14 21 H 0.03 1.69 8.14 -2.38 -0.02 1.67 14 22 H 0.05 2.72 8.14 -2.39 -0.02 2.70 14 23 H 0.27 14.28 8.31 -92.71 -0.77 13.51 14 Total: -1.00 -59.76 218.86 4.55 -55.22 By element: Atomic # 1 Polarization: -1.79 SS G_CDS: 1.21 Total: -0.58 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: 3.18 Total: -20.75 kcal Atomic # 7 Polarization: -69.94 SS G_CDS: -1.71 Total: -71.65 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.16 Total: -6.61 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -59.76 4.55 -55.22 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260506390.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.635 kcal (2) G-P(sol) polarization free energy of solvation -59.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds