Wall clock time and date at job start Mon Mar 30 2020 02:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30622 * 1 3 3 Si 1.86801 * 119.99776 * 2 1 4 4 H 1.48491 * 109.47023 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46957 * 300.00362 * 3 2 1 6 6 H 1.48498 * 109.47335 * 59.99931 * 3 2 1 7 7 C 1.40324 * 120.00051 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99901 * 180.02562 * 7 2 1 9 9 C 1.40006 * 120.00013 * 359.97438 * 7 2 1 10 10 N 1.32384 * 125.48663 * 180.02562 * 9 7 2 11 11 C 1.34224 * 108.57322 * 180.02562 * 10 9 7 12 12 C 1.47551 * 126.32834 * 179.97438 * 11 10 9 13 13 O 1.21505 * 119.99959 * 180.02562 * 12 11 10 14 14 O 1.34749 * 120.00245 * 0.02753 * 12 11 10 15 15 C 1.38365 * 107.33721 * 0.02562 * 11 10 9 16 16 O 1.34143 * 107.03436 * 0.02562 * 15 11 10 17 17 H 0.96998 * 120.00451 * 359.97438 * 1 2 3 18 18 H 0.96703 * 117.00163 * 179.97438 * 14 12 11 19 19 H 1.08007 * 126.48214 * 180.02562 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 3.7001 1.3465 -0.0006 5 1 1.8813 2.3965 -1.2125 6 1 1.8814 2.3965 1.2125 7 6 2.0078 -1.2152 -0.0005 8 1 3.0878 -1.2152 -0.0001 9 6 1.3078 -2.4277 -0.0005 10 7 1.8571 -3.6322 -0.0005 11 6 0.8769 -4.5491 -0.0011 12 6 1.0505 -6.0144 -0.0018 13 8 0.0770 -6.7415 -0.0028 14 8 2.2886 -6.5462 -0.0014 15 6 -0.3265 -3.8662 -0.0021 16 8 -0.0352 -2.5568 -0.0026 17 1 -0.4851 0.8400 0.0004 18 1 2.3520 -7.5111 -0.0016 19 1 -1.3137 -4.3045 -0.0023 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260586566.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:58 Heat of formation + Delta-G solvation = -114.407014 kcal Electronic energy + Delta-G solvation = -10475.518224 eV Core-core repulsion = 8151.246104 eV Total energy + Delta-G solvation = -2324.272121 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 183.036 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -43.28015 -40.88465 -37.08080 -35.76563 -35.01298 -31.47635 -28.00130 -25.64963 -22.80598 -21.90596 -19.73414 -19.02483 -17.77397 -17.21663 -17.12788 -16.41025 -16.20164 -15.11387 -14.39066 -13.96997 -13.38137 -13.00856 -12.89038 -12.63940 -12.01323 -11.86952 -11.85467 -11.36508 -10.93715 -9.77480 -8.88742 -6.86171 0.27095 1.16503 1.43379 1.63307 1.70031 2.04274 2.18680 2.30117 2.68665 3.13415 3.90001 4.36713 4.71568 5.02500 5.30245 5.39901 5.58961 6.00290 6.37739 6.47057 6.99669 7.53675 8.16002 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.100685 B = 0.010778 C = 0.009769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 278.027740 B = 2597.367776 C = 2865.554307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.029 3.971 3 Si 1.018 2.982 4 H -0.251 1.251 5 H -0.259 1.259 6 H -0.259 1.259 7 C -0.454 4.454 8 H 0.118 0.882 9 C 0.315 3.685 10 N -0.608 5.608 11 C -0.064 4.064 12 C 0.585 3.415 13 O -0.540 6.540 14 O -0.495 6.495 15 C -0.101 4.101 16 O -0.192 6.192 17 H 0.302 0.698 18 H 0.430 0.570 19 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.431 -0.733 0.002 1.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.191 4.191 3 Si 0.835 3.165 4 H -0.174 1.174 5 H -0.183 1.183 6 H -0.183 1.183 7 C -0.489 4.489 8 H 0.136 0.864 9 C 0.130 3.870 10 N -0.344 5.344 11 C -0.185 4.185 12 C 0.431 3.569 13 O -0.432 6.432 14 O -0.307 6.307 15 C -0.179 4.179 16 O -0.084 6.084 17 H 0.113 0.887 18 H 0.292 0.708 19 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 1.635 -0.532 0.001 1.719 hybrid contribution -0.676 -0.234 0.000 0.715 sum 0.959 -0.766 0.001 1.227 Atomic orbital electron populations 1.69719 1.09405 1.32319 1.31911 1.27238 0.95939 1.05543 0.90376 0.84615 0.79028 0.73416 0.79402 1.17381 1.18300 1.18289 1.18979 0.95510 0.86281 1.48099 0.86422 1.22690 0.76641 0.94373 0.93255 1.71115 1.30850 0.98015 1.34383 1.20908 0.91691 0.92288 1.13637 1.19254 0.80687 0.86273 0.70701 1.90812 1.41419 1.61706 1.49283 1.84687 1.29938 1.31314 1.84771 1.25614 0.99938 0.81293 1.11040 1.84800 1.27165 1.24614 1.71809 0.88733 0.70838 0.75294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.56 11.96 21.89 0.26 -40.29 13 2 C 0.03 1.39 5.50 85.38 0.47 1.86 13 3 Si 1.02 35.04 29.56 68.60 2.03 37.07 13 4 H -0.25 -8.36 7.11 99.48 0.71 -7.66 13 5 H -0.26 -8.41 7.11 99.48 0.71 -7.70 13 6 H -0.26 -8.40 7.11 99.48 0.71 -7.70 13 7 C -0.45 -24.26 9.46 23.21 0.22 -24.04 13 8 H 0.12 6.00 7.85 -2.91 -0.02 5.97 13 9 C 0.32 18.04 7.63 85.04 0.65 18.68 13 10 N -0.61 -34.10 11.38 -298.26 -3.39 -37.49 13 11 C -0.06 -3.19 7.06 41.27 0.29 -2.90 13 12 C 0.59 24.68 8.34 70.28 0.59 25.27 13 13 O -0.54 -22.70 17.69 19.82 0.35 -22.35 13 14 O -0.49 -17.21 13.44 -56.60 -0.76 -17.97 13 15 C -0.10 -4.89 12.04 67.85 0.82 -4.07 13 16 O -0.19 -10.67 8.99 -7.16 -0.06 -10.74 13 17 H 0.30 13.25 8.29 -92.71 -0.77 12.48 13 18 H 0.43 8.84 9.11 -74.05 -0.67 8.17 13 19 H 0.23 9.00 8.06 -2.91 -0.02 8.98 13 Total: -1.00 -66.52 197.67 2.08 -64.44 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.63 Total: 12.54 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: 3.03 Total: 14.80 kcal Atomic # 7 Polarization: -74.65 SS G_CDS: -3.13 Total: -77.79 kcal Atomic # 8 Polarization: -50.59 SS G_CDS: -0.47 Total: -51.06 kcal Atomic # 14 Polarization: 35.04 SS G_CDS: 2.03 Total: 37.07 kcal Total: -66.52 2.08 -64.44 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260586566.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.971 kcal (2) G-P(sol) polarization free energy of solvation -66.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds