Wall clock time and date at job start Mon Mar 30 2020 02:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46953 * 179.97438 * 10 9 7 12 12 C 1.40983 * 126.74850 * 125.00152 * 11 10 9 13 13 C 1.36378 * 103.93423 * 180.02562 * 12 11 10 14 14 O 1.35423 * 126.86408 * 180.02562 * 13 12 11 15 15 O 1.34178 * 106.27299 * 359.97438 * 13 12 11 16 16 N 1.20906 * 111.50237 * 359.70905 * 15 13 12 17 17 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 18 18 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 19 19 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 20 20 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 21 21 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 22 22 H 1.08004 * 128.03114 * 0.02562 * 12 11 10 23 23 H 0.96699 * 113.99741 * 90.00189 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4918 -4.9672 -0.0033 12 6 1.6309 -6.0211 -0.9293 13 6 0.7394 -6.9581 -0.4967 14 8 0.4946 -8.1664 -1.0573 15 8 0.1542 -6.4442 0.5959 16 7 0.5878 -5.3459 0.8557 17 1 -0.4849 0.8400 0.0004 18 1 0.6240 -2.5575 0.8880 19 1 0.6247 -2.5562 -0.8920 20 1 2.8720 -3.6035 -0.8927 21 1 2.8719 -3.6051 0.8873 22 1 2.2904 -6.0741 -1.7830 23 1 1.0499 -8.8793 -0.7133 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260587483.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:35 Heat of formation + Delta-G solvation = -18.346807 kcal Electronic energy + Delta-G solvation = -10478.000464 eV Core-core repulsion = 8293.726921 eV Total energy + Delta-G solvation = -2184.273543 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -45.93334 -38.82857 -36.78390 -34.89088 -32.30363 -31.41757 -27.61334 -24.28878 -23.95556 -21.93874 -19.73347 -18.80208 -18.47239 -17.39407 -16.49425 -15.98085 -15.44790 -14.88772 -14.67010 -14.06618 -13.39201 -13.21680 -12.87949 -12.56578 -12.22759 -11.99685 -11.41383 -11.29554 -10.83055 -10.57537 -10.27750 -8.21290 -6.34538 0.38230 1.23812 1.41522 1.43896 1.55117 1.66930 2.41078 3.12159 3.25203 3.43665 3.98821 4.32253 4.51870 4.64204 4.81416 4.93871 5.15939 5.45145 5.61818 5.79278 6.16512 6.45188 6.82683 7.33632 7.36052 8.91230 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.112479 B = 0.007920 C = 0.007701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 248.876386 B = 3534.361534 C = 3635.051389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.974 3.026 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.258 1.258 7 C -0.544 4.544 8 H 0.073 0.927 9 C 0.033 3.967 10 C -0.030 4.030 11 C 0.022 3.978 12 C -0.232 4.232 13 C 0.147 3.853 14 O -0.428 6.428 15 O 0.076 5.924 16 N -0.384 5.384 17 H 0.264 0.736 18 H -0.015 1.015 19 H -0.014 1.014 20 H 0.098 0.902 21 H 0.077 0.923 22 H 0.207 0.793 23 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.620 -13.607 -2.263 14.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.798 3.202 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.182 1.182 7 C -0.582 4.582 8 H 0.091 0.909 9 C -0.004 4.004 10 C -0.068 4.068 11 C -0.135 4.135 12 C -0.253 4.253 13 C 0.039 3.961 14 O -0.240 6.240 15 O 0.007 5.993 16 N -0.094 5.094 17 H 0.072 0.928 18 H 0.004 0.996 19 H 0.004 0.996 20 H 0.117 0.883 21 H 0.095 0.905 22 H 0.224 0.776 23 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 4.542 -12.723 -1.535 13.597 hybrid contribution 0.536 0.324 -0.333 0.710 sum 5.079 -12.399 -1.867 13.528 Atomic orbital electron populations 1.70143 1.08192 1.27891 1.51500 1.26116 0.95777 1.03894 0.94541 0.85316 0.78584 0.77707 0.78624 1.19466 1.21070 1.18241 1.21689 0.93959 0.91690 1.50815 0.90931 1.18901 0.94104 0.92853 0.94580 1.20089 0.96736 0.86469 1.03472 1.23793 0.96874 0.99568 0.93239 1.22622 1.04265 0.93392 1.05047 1.21833 0.94357 0.90952 0.89006 1.84882 1.66146 1.14630 1.58380 1.84844 1.52012 1.23975 1.38438 1.74099 1.15124 0.96649 1.23571 0.92782 0.99630 0.99551 0.88343 0.90452 0.77580 0.70614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.06 13.29 21.45 0.28 -58.77 14 2 C -0.01 -0.34 5.46 84.66 0.46 0.12 14 3 Si 0.97 44.52 29.54 68.60 2.03 46.55 14 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 14 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 14 6 H -0.26 -11.10 7.11 99.48 0.71 -10.40 14 7 C -0.54 -31.26 9.11 25.60 0.23 -31.02 14 8 H 0.07 3.86 7.74 -2.91 -0.02 3.83 14 9 C 0.03 1.85 4.95 29.85 0.15 1.99 14 10 C -0.03 -1.25 5.75 29.85 0.17 -1.08 14 11 C 0.02 0.84 6.57 43.46 0.29 1.12 14 12 C -0.23 -6.66 11.14 22.51 0.25 -6.41 14 13 C 0.15 3.96 8.74 67.39 0.59 4.55 14 14 O -0.43 -7.77 13.63 -65.13 -0.89 -8.66 14 15 O 0.08 2.63 11.21 92.40 1.04 3.67 14 16 N -0.38 -15.86 12.05 -49.08 -0.59 -16.46 14 17 H 0.26 15.54 8.31 -92.71 -0.77 14.77 14 18 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 14 19 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 14 20 H 0.10 3.61 8.14 -2.39 -0.02 3.59 14 21 H 0.08 3.13 8.14 -2.39 -0.02 3.11 14 22 H 0.21 4.38 8.06 -2.91 -0.02 4.35 14 23 H 0.43 2.21 9.06 -74.06 -0.67 1.54 14 Total: -1.00 -73.20 218.48 4.56 -68.63 By element: Atomic # 1 Polarization: -4.79 SS G_CDS: 0.56 Total: -4.24 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 2.14 Total: -30.73 kcal Atomic # 7 Polarization: -74.92 SS G_CDS: -0.31 Total: -75.23 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: 0.15 Total: -4.99 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -73.20 4.56 -68.63 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260587483.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.287 kcal (2) G-P(sol) polarization free energy of solvation -73.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds