Wall clock time and date at job start Mon Mar 30 2020 02:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76199 * 103.00071 * 2 1 4 4 C 1.37757 * 126.10910 * 0.02647 * 3 2 1 5 5 N 1.36460 * 108.69799 * 179.97438 * 4 3 2 6 6 H 0.97008 * 125.67449 * 180.02562 * 5 4 3 7 7 C 1.38042 * 108.64859 * 359.97438 * 5 4 3 8 8 C 1.39925 * 126.15780 * 180.02562 * 7 5 4 9 9 H 1.07997 * 120.00359 * 179.97438 * 8 7 5 10 10 C 1.39980 * 119.99848 * 359.97438 * 8 7 5 11 11 N 1.30908 * 120.00113 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00101 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47243 * 90.00090 * 12 10 8 14 14 H 1.48500 * 109.47539 * 210.00257 * 12 10 8 15 15 H 1.48501 * 109.47144 * 330.00089 * 12 10 8 16 16 C 1.39620 * 107.68586 * 359.77759 * 7 5 4 17 17 H 1.09000 * 109.46946 * 60.00083 * 1 2 3 18 18 H 1.08999 * 109.47514 * 180.02562 * 1 2 3 19 19 H 1.08998 * 109.47085 * 299.99567 * 1 2 3 20 20 H 1.08000 * 125.64909 * 359.97438 * 4 3 2 21 21 H 0.96998 * 120.00502 * 179.97438 * 11 10 8 22 22 H 1.07997 * 126.40364 * 180.24257 * 16 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.3086 2.7582 0.0005 5 7 1.9994 3.9351 0.0009 6 1 1.6061 4.8219 0.0017 7 6 3.3508 3.6536 0.0012 8 6 4.3893 4.5914 0.0022 9 1 5.4169 4.2591 0.0028 10 6 4.0964 5.9602 0.0024 11 7 2.8508 6.3630 0.0021 12 14 5.4828 7.2121 0.0043 13 1 5.8517 7.5444 -1.3952 14 1 5.0369 8.4435 0.7044 15 1 6.6620 6.6436 0.7055 16 6 3.4949 2.2649 0.0062 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 0.2331 2.6596 0.0006 21 1 2.6477 7.3114 0.0027 22 1 4.4256 1.7171 0.0114 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260774055.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:08 Heat of formation + Delta-G solvation = 20.234488 kcal Electronic energy + Delta-G solvation = -8787.340551 eV Core-core repulsion = 7047.492889 eV Total energy + Delta-G solvation = -1739.847661 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 183.041 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -38.81258 -33.46921 -29.15132 -29.05815 -28.10153 -24.36989 -19.73736 -19.01380 -18.05382 -15.46535 -15.03318 -14.46906 -13.21553 -13.12917 -12.71762 -12.36072 -12.21915 -11.94770 -11.27582 -11.09330 -10.90030 -10.41007 -10.03562 -9.46555 -9.45048 -8.46773 -7.04772 -6.90806 -6.16894 -4.28416 2.55200 2.93420 3.05511 3.11170 3.56535 3.75930 3.91399 4.10750 5.31705 5.37027 5.56375 5.57795 6.08273 6.45778 6.96661 7.20159 7.45892 7.61177 7.94079 8.02958 8.69619 8.72703 9.09083 9.63617 10.18079 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.116845 B = 0.010108 C = 0.009350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 239.575767 B = 2769.516628 C = 2993.947299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.147 6.147 3 C -0.138 4.138 4 C -0.120 4.120 5 N -0.543 5.543 6 H 0.421 0.579 7 C 0.238 3.762 8 C -0.444 4.444 9 H 0.092 0.908 10 C 0.064 3.936 11 N -0.858 5.858 12 Si 0.931 3.069 13 H -0.270 1.270 14 H -0.279 1.279 15 H -0.262 1.262 16 C -0.310 4.310 17 H 0.072 0.928 18 H 0.090 0.910 19 H 0.072 0.928 20 H 0.129 0.871 21 H 0.285 0.715 22 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.741 -2.651 0.000 3.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.088 5.912 3 C -0.257 4.257 4 C -0.254 4.254 5 N -0.151 5.151 6 H 0.269 0.731 7 C 0.120 3.880 8 C -0.479 4.479 9 H 0.110 0.890 10 C -0.147 4.147 11 N -0.492 5.492 12 Si 0.756 3.244 13 H -0.195 1.195 14 H -0.204 1.204 15 H -0.186 1.186 16 C -0.336 4.336 17 H 0.091 0.909 18 H 0.109 0.891 19 H 0.091 0.909 20 H 0.147 0.853 21 H 0.096 0.904 22 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.327 -3.294 0.005 4.033 hybrid contribution -0.610 2.106 -0.008 2.192 sum -2.937 -1.188 -0.003 3.169 Atomic orbital electron populations 1.23350 0.97076 1.05052 1.04728 1.84528 1.04058 1.07110 1.95550 1.20624 0.97176 0.91932 1.15988 1.21403 0.94772 0.85711 1.23501 1.42870 1.06061 1.07734 1.58400 0.73127 1.17962 0.82510 0.91791 0.95725 1.18810 0.93939 0.89392 1.45785 0.89019 1.25907 0.96885 0.99710 0.92233 1.68801 1.19394 1.17911 1.43072 0.85918 0.80724 0.78694 0.79057 1.19546 1.20409 1.18571 1.20223 0.93808 0.92036 1.27536 0.90895 0.89089 0.90900 0.85318 0.90403 0.87274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 9.61 101.05 0.97 -1.08 14 2 S -0.15 -2.97 22.77 -107.50 -2.45 -5.42 14 3 C -0.14 -3.41 6.37 -39.23 -0.25 -3.66 14 4 C -0.12 -2.91 11.30 -15.67 -0.18 -3.09 14 5 N -0.54 -14.27 5.78 -9.90 -0.06 -14.33 14 6 H 0.42 10.84 6.24 -40.82 -0.25 10.59 14 7 C 0.24 6.61 6.70 -83.92 -0.56 6.05 14 8 C -0.44 -11.98 9.32 -38.30 -0.36 -12.34 14 9 H 0.09 2.36 7.85 -52.49 -0.41 1.95 14 10 C 0.06 1.60 5.50 -17.29 -0.10 1.50 14 11 N -0.86 -21.66 10.66 55.55 0.59 -21.07 14 12 Si 0.93 18.93 29.56 -169.99 -5.03 13.91 14 13 H -0.27 -5.43 7.11 56.52 0.40 -5.03 14 14 H -0.28 -5.54 7.11 56.52 0.40 -5.14 14 15 H -0.26 -5.26 7.11 56.52 0.40 -4.86 14 16 C -0.31 -8.34 10.85 -38.54 -0.42 -8.76 14 17 H 0.07 1.10 8.14 -51.92 -0.42 0.67 14 18 H 0.09 1.14 8.14 -51.92 -0.42 0.71 14 19 H 0.07 1.10 8.14 -51.92 -0.42 0.67 14 20 H 0.13 2.71 7.46 -52.49 -0.39 2.32 14 21 H 0.28 6.56 8.30 -40.82 -0.34 6.22 14 22 H 0.11 2.83 8.06 -52.49 -0.42 2.40 14 LS Contribution 212.06 15.07 3.20 3.20 Total: -1.00 -28.05 212.06 -6.51 -34.56 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -1.88 Total: 10.52 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: -0.89 Total: -21.38 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.54 Total: -35.39 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.91 kcal Atomic # 16 Polarization: -2.97 SS G_CDS: -2.45 Total: -5.42 kcal Total LS contribution 3.20 Total: 3.20 kcal Total: -28.05 -6.51 -34.56 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260774055.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.798 kcal (2) G-P(sol) polarization free energy of solvation -28.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds