Wall clock time and date at job start Mon Mar 30 2020 02:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76199 * 103.00071 * 2 1 4 4 C 1.37757 * 126.10910 * 0.02647 * 3 2 1 5 5 N 1.36460 * 108.69799 * 179.97438 * 4 3 2 6 6 H 0.97008 * 125.67449 * 180.02562 * 5 4 3 7 7 C 1.38042 * 108.64859 * 359.97438 * 5 4 3 8 8 C 1.39925 * 126.15780 * 180.02562 * 7 5 4 9 9 H 1.07997 * 120.00359 * 179.97438 * 8 7 5 10 10 C 1.39980 * 119.99848 * 359.97438 * 8 7 5 11 11 N 1.30908 * 120.00113 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00101 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47243 * 90.00090 * 12 10 8 14 14 H 1.48500 * 109.47539 * 210.00257 * 12 10 8 15 15 H 1.48501 * 109.47144 * 330.00089 * 12 10 8 16 16 C 1.39620 * 107.68586 * 359.77759 * 7 5 4 17 17 H 1.09000 * 109.46946 * 60.00083 * 1 2 3 18 18 H 1.08999 * 109.47514 * 180.02562 * 1 2 3 19 19 H 1.08998 * 109.47085 * 299.99567 * 1 2 3 20 20 H 1.08000 * 125.64909 * 359.97438 * 4 3 2 21 21 H 0.96998 * 120.00502 * 179.97438 * 11 10 8 22 22 H 1.07997 * 126.40364 * 180.24257 * 16 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.3086 2.7582 0.0005 5 7 1.9994 3.9351 0.0009 6 1 1.6061 4.8219 0.0017 7 6 3.3508 3.6536 0.0012 8 6 4.3893 4.5914 0.0022 9 1 5.4169 4.2591 0.0028 10 6 4.0964 5.9602 0.0024 11 7 2.8508 6.3630 0.0021 12 14 5.4828 7.2121 0.0043 13 1 5.8517 7.5444 -1.3952 14 1 5.0369 8.4435 0.7044 15 1 6.6620 6.6436 0.7055 16 6 3.4949 2.2649 0.0062 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 0.2331 2.6596 0.0006 21 1 2.6477 7.3114 0.0027 22 1 4.4256 1.7171 0.0114 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260774055.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:08 Heat of formation + Delta-G solvation = 3.505753 kcal Electronic energy + Delta-G solvation = -8788.065963 eV Core-core repulsion = 7047.492889 eV Total energy + Delta-G solvation = -1740.573074 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 183.041 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.77130 -35.41042 -31.12618 -30.82962 -29.57085 -26.30869 -21.66058 -20.93920 -20.04829 -17.42768 -16.68890 -16.15405 -14.70734 -14.63533 -14.52338 -14.08965 -14.01462 -13.54856 -13.03252 -12.92578 -12.63665 -12.29077 -11.78909 -11.29797 -11.02847 -10.27866 -9.07704 -8.80518 -7.90422 -6.29250 1.06182 1.28123 1.40044 1.54650 1.87528 1.93023 2.17327 2.20955 3.33573 3.37567 4.38955 4.43587 4.58347 4.92300 5.01077 5.25608 5.44292 5.64138 5.93692 6.04559 6.71242 6.76128 7.07972 7.65226 8.29442 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.116845 B = 0.010108 C = 0.009350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 239.575767 B = 2769.516628 C = 2993.947299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.157 6.157 3 C -0.152 4.152 4 C -0.121 4.121 5 N -0.552 5.552 6 H 0.420 0.580 7 C 0.207 3.793 8 C -0.483 4.483 9 H 0.089 0.911 10 C 0.026 3.974 11 N -0.873 5.873 12 Si 1.006 2.994 13 H -0.263 1.263 14 H -0.266 1.266 15 H -0.260 1.260 16 C -0.346 4.346 17 H 0.079 0.921 18 H 0.127 0.873 19 H 0.079 0.921 20 H 0.162 0.838 21 H 0.296 0.704 22 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.514 -2.318 0.000 4.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S 0.077 5.923 3 C -0.270 4.270 4 C -0.254 4.254 5 N -0.161 5.161 6 H 0.268 0.732 7 C 0.090 3.910 8 C -0.518 4.518 9 H 0.107 0.893 10 C -0.184 4.184 11 N -0.507 5.507 12 Si 0.827 3.173 13 H -0.188 1.188 14 H -0.191 1.191 15 H -0.184 1.184 16 C -0.372 4.372 17 H 0.098 0.902 18 H 0.145 0.855 19 H 0.098 0.902 20 H 0.180 0.820 21 H 0.107 0.893 22 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.121 -2.981 0.004 4.316 hybrid contribution -0.479 1.941 -0.010 1.999 sum -3.600 -1.040 -0.005 3.747 Atomic orbital electron populations 1.23498 0.92509 1.07670 1.05436 1.84456 1.08965 1.03517 1.95337 1.20973 0.96395 0.94792 1.14875 1.21982 0.96252 0.84966 1.22221 1.42927 1.05768 1.08339 1.59026 0.73242 1.18371 0.83522 0.92584 0.96521 1.19083 0.93892 0.90824 1.48042 0.89256 1.26841 0.99699 1.00992 0.90825 1.68819 1.20906 1.19075 1.41859 0.84803 0.77203 0.75942 0.79357 1.18778 1.19061 1.18383 1.20407 0.94888 0.92397 1.29481 0.90155 0.85503 0.90162 0.82042 0.89289 0.87891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.35 9.61 113.37 1.09 -2.27 14 2 S -0.16 -6.13 22.77 -56.49 -1.29 -7.41 14 3 C -0.15 -7.49 6.37 22.50 0.14 -7.35 14 4 C -0.12 -5.78 11.30 83.86 0.95 -4.83 14 5 N -0.55 -29.29 5.78 -185.25 -1.07 -30.36 14 6 H 0.42 21.77 6.24 -92.70 -0.58 21.19 14 7 C 0.21 11.85 6.70 38.91 0.26 12.11 14 8 C -0.48 -26.74 9.32 23.10 0.22 -26.52 14 9 H 0.09 4.77 7.85 -2.91 -0.02 4.75 14 10 C 0.03 1.29 5.50 85.25 0.47 1.75 14 11 N -0.87 -43.78 10.66 21.84 0.23 -43.54 14 12 Si 1.01 38.16 29.56 68.60 2.03 40.19 14 13 H -0.26 -9.65 7.11 99.48 0.71 -8.94 14 14 H -0.27 -9.49 7.11 99.48 0.71 -8.79 14 15 H -0.26 -9.71 7.11 99.48 0.71 -9.01 14 16 C -0.35 -19.17 10.85 22.95 0.25 -18.92 14 17 H 0.08 2.12 8.14 -2.39 -0.02 2.11 14 18 H 0.13 2.60 8.14 -2.39 -0.02 2.58 14 19 H 0.08 2.12 8.14 -2.39 -0.02 2.10 14 20 H 0.16 6.44 7.46 -2.91 -0.02 6.42 14 21 H 0.30 13.30 8.30 -92.71 -0.77 12.53 14 22 H 0.10 5.60 8.06 -2.91 -0.02 5.58 14 Total: -1.00 -60.55 212.06 3.92 -56.63 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 0.65 Total: 30.53 kcal Atomic # 6 Polarization: -49.40 SS G_CDS: 3.37 Total: -46.03 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -0.84 Total: -73.90 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.19 kcal Atomic # 16 Polarization: -6.13 SS G_CDS: -1.29 Total: -7.41 kcal Total: -60.55 3.92 -56.63 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260774055.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.132 kcal (2) G-P(sol) polarization free energy of solvation -60.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds