Wall clock time and date at job start Mon Mar 30 2020 02:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30995 * 1 3 3 Si 1.86800 * 120.00231 * 2 1 4 4 H 1.48501 * 109.47165 * 269.99890 * 3 2 1 5 5 H 1.48502 * 109.47066 * 29.99970 * 3 2 1 6 6 H 1.48500 * 109.47062 * 150.00445 * 3 2 1 7 7 C 1.39734 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99665 * 180.02562 * 7 2 1 9 9 C 1.41257 * 120.00268 * 359.97438 * 7 2 1 10 10 C 1.38788 * 126.67951 * 180.02562 * 9 7 2 11 11 O 1.34420 * 106.50780 * 180.02562 * 10 9 7 12 12 C 1.34052 * 108.38780 * 0.02562 * 11 10 9 13 13 C 1.50705 * 125.07769 * 180.26846 * 12 11 10 14 14 C 1.53000 * 109.46849 * 269.68854 * 13 12 11 15 15 O 1.42897 * 109.47067 * 179.97438 * 14 13 12 16 16 N 1.29914 * 109.84160 * 359.97438 * 12 11 10 17 17 H 0.97000 * 119.99520 * 0.02562 * 1 2 3 18 18 H 1.08009 * 126.74390 * 0.04089 * 10 9 7 19 19 H 1.08997 * 109.47208 * 29.69154 * 13 12 11 20 20 H 1.08998 * 109.46875 * 149.69541 * 13 12 11 21 21 H 1.08997 * 109.47460 * 300.00145 * 14 13 12 22 22 H 1.09003 * 109.47261 * 60.00496 * 14 13 12 23 23 H 0.96705 * 114.00377 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2440 1.6177 0.0000 4 1 2.4916 2.0464 -1.4001 5 1 1.4415 2.6527 0.7000 6 1 3.5416 1.4400 0.6999 7 6 2.0086 -1.2102 -0.0005 8 1 3.0886 -1.2101 -0.0001 9 6 1.3023 -2.4335 -0.0005 10 6 1.8517 -3.7080 -0.0005 11 8 0.8194 -4.5689 -0.0011 12 6 -0.3201 -3.8629 -0.0020 13 6 -1.7059 -4.4551 0.0029 14 6 -2.1804 -4.6542 -1.4380 15 8 -3.4942 -5.2163 -1.4334 16 7 -0.0513 -2.5918 -0.0015 17 1 -0.4849 0.8401 -0.0004 18 1 2.9023 -3.9587 0.0001 19 1 -1.6883 -5.4166 0.5159 20 1 -2.3877 -3.7798 0.5198 21 1 -2.1980 -3.6927 -1.9509 22 1 -1.4986 -5.3295 -1.9550 23 1 -3.8592 -5.3705 -2.3155 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260815962.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:32 Heat of formation + Delta-G solvation = -70.855596 kcal Electronic energy + Delta-G solvation = -10684.009559 eV Core-core repulsion = 8497.459064 eV Total energy + Delta-G solvation = -2186.550495 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -43.12163 -37.98765 -36.05155 -34.38099 -33.18345 -29.91081 -27.15093 -24.39764 -22.57312 -21.27239 -19.33507 -18.42139 -17.07088 -16.88391 -16.59604 -16.22584 -15.11390 -14.84413 -14.36647 -14.14989 -13.08275 -13.01642 -12.74099 -12.43682 -12.36009 -11.87790 -11.83814 -10.96035 -10.80449 -10.64238 -9.37372 -8.44713 -6.41194 0.99284 1.40191 1.45561 1.55497 2.25294 2.27948 2.39737 3.30201 3.44450 3.85463 4.07653 4.21586 4.44041 4.74506 4.89577 5.02303 5.22051 5.36293 5.57352 5.73514 6.24487 6.76510 6.85742 6.91772 7.66862 8.52149 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.061050 B = 0.011063 C = 0.009668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.531001 B = 2530.411399 C = 2895.452510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.024 3.976 3 Si 0.994 3.006 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.489 4.489 8 H 0.090 0.910 9 C 0.136 3.864 10 C -0.294 4.294 11 O -0.230 6.230 12 C 0.142 3.858 13 C -0.008 4.008 14 C 0.096 3.904 15 O -0.580 6.580 16 N -0.481 5.481 17 H 0.278 0.722 18 H 0.209 0.791 19 H 0.107 0.893 20 H 0.097 0.903 21 H 0.041 0.959 22 H 0.057 0.943 23 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.617 -3.953 -2.755 5.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.192 4.192 3 Si 0.814 3.186 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.522 4.522 8 H 0.108 0.892 9 C 0.020 3.980 10 C -0.362 4.362 11 O -0.119 6.119 12 C -0.066 4.066 13 C -0.046 4.046 14 C 0.017 3.983 15 O -0.389 6.389 16 N -0.216 5.216 17 H 0.088 0.912 18 H 0.225 0.775 19 H 0.125 0.875 20 H 0.115 0.885 21 H 0.059 0.941 22 H 0.075 0.925 23 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -3.187 -3.394 -2.113 5.113 hybrid contribution 0.958 0.181 -0.549 1.120 sum -2.228 -3.213 -2.663 4.731 Atomic orbital electron populations 1.70182 1.08752 1.29220 1.34844 1.26910 0.95813 1.04624 0.91872 0.85038 0.78765 0.75415 0.79351 1.18722 1.19485 1.17857 1.18997 0.94348 0.89171 1.49638 0.89160 1.19965 0.87654 0.94354 0.96001 1.24966 0.91684 0.87603 1.31919 1.83946 1.15282 1.39340 1.73365 1.26551 0.89917 0.86934 1.03198 1.19673 0.84071 1.01930 0.98889 1.21791 0.84265 0.97285 0.94929 1.86343 1.30951 1.85408 1.36177 1.71256 1.16340 1.14964 1.19054 0.91180 0.77493 0.87507 0.88468 0.94069 0.92455 0.74655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -46.20 11.96 21.80 0.26 -45.93 14 2 C 0.02 1.31 5.49 85.18 0.47 1.78 14 3 Si 0.99 40.27 29.56 68.60 2.03 42.30 14 4 H -0.26 -10.18 7.11 99.48 0.71 -9.47 14 5 H -0.27 -10.47 7.11 99.48 0.71 -9.76 14 6 H -0.25 -9.85 7.11 99.48 0.71 -9.15 14 7 C -0.49 -28.17 9.39 23.37 0.22 -27.95 14 8 H 0.09 4.82 7.84 -2.91 -0.02 4.79 14 9 C 0.14 8.01 6.69 39.33 0.26 8.27 14 10 C -0.29 -15.39 12.28 67.95 0.83 -14.55 14 11 O -0.23 -11.50 10.72 -1.22 -0.01 -11.51 14 12 C 0.14 6.96 7.52 88.39 0.66 7.62 14 13 C -0.01 -0.28 6.21 29.85 0.19 -0.09 14 14 C 0.10 3.02 7.03 71.98 0.51 3.53 14 15 O -0.58 -15.20 13.66 -148.98 -2.03 -17.23 14 16 N -0.48 -27.88 9.58 -296.18 -2.84 -30.72 14 17 H 0.28 14.48 8.30 -92.71 -0.77 13.71 14 18 H 0.21 9.33 8.06 -2.91 -0.02 9.30 14 19 H 0.11 3.39 8.14 -2.39 -0.02 3.37 14 20 H 0.10 3.63 8.14 -2.39 -0.02 3.62 14 21 H 0.04 1.42 8.14 -2.39 -0.02 1.40 14 22 H 0.06 1.68 8.14 -2.39 -0.02 1.66 14 23 H 0.40 6.20 9.12 -74.05 -0.68 5.52 14 Total: -1.00 -70.60 217.30 1.10 -69.51 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.55 Total: 14.99 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: 3.14 Total: -21.40 kcal Atomic # 7 Polarization: -74.08 SS G_CDS: -2.58 Total: -76.65 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -2.05 Total: -28.75 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.30 kcal Total: -70.60 1.10 -69.51 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260815962.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.348 kcal (2) G-P(sol) polarization free energy of solvation -70.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds