Wall clock time and date at job start Mon Mar 30 2020 02:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31523 * 119.99908 * 179.72112 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 359.71709 * 6 4 2 9 9 H 1.48500 * 109.47210 * 90.00069 * 8 6 4 10 10 H 1.48504 * 109.47424 * 210.00300 * 8 6 4 11 11 H 1.48502 * 109.46888 * 330.00390 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 C 1.35438 * 126.27710 * 119.99811 * 12 2 1 14 14 C 1.41762 * 104.17454 * 179.97438 * 13 12 2 15 15 O 1.22042 * 127.16403 * 180.02562 * 14 13 12 16 16 N 1.34854 * 105.66642 * 0.02562 * 14 13 12 17 17 H 0.97001 * 124.70582 * 179.97438 * 16 14 13 18 18 O 1.20972 * 110.58477 * 359.72066 * 16 14 13 19 19 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 20 20 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 22 22 H 0.96995 * 120.00181 * 179.97438 * 7 6 4 23 23 H 1.07999 * 127.90888 * 0.02562 * 13 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 2.1285 -0.8661 3.5564 8 14 0.6207 1.2760 2.6542 9 1 -0.8074 0.8707 2.6929 10 1 0.9674 1.9881 3.9104 11 1 0.8484 2.1766 1.4956 12 6 2.0323 -0.7103 -1.2306 13 6 2.8141 -0.1781 -2.2000 14 6 3.0010 -1.2419 -3.1183 15 8 3.6452 -1.2167 -4.1545 16 7 2.3187 -2.2873 -2.6082 17 1 2.2613 -3.1634 -3.0205 18 8 1.7923 -1.9822 -1.5626 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8912 -0.5369 4.4374 23 1 3.2061 0.8265 -2.2594 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260820503.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:36 Heat of formation + Delta-G solvation = 10.370890 kcal Electronic energy + Delta-G solvation = -10971.573139 eV Core-core repulsion = 8788.544888 eV Total energy + Delta-G solvation = -2183.028250 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -46.00849 -39.09846 -37.11273 -34.25319 -32.88147 -32.19374 -27.18174 -25.00340 -24.29309 -21.20880 -20.55967 -19.04474 -18.57036 -17.18195 -16.32253 -16.15075 -15.35890 -14.92863 -14.79946 -14.48670 -14.06604 -13.33463 -13.10752 -12.57474 -12.05503 -11.50664 -11.43918 -11.10271 -10.77877 -10.62983 -9.62595 -8.31352 -6.41756 0.32803 1.23799 1.40420 1.45826 1.55775 1.84665 2.34169 2.56071 3.04139 3.70786 4.04693 4.39331 4.54145 4.71322 4.81437 5.01622 5.05605 5.40390 5.47000 5.54837 6.16084 6.60759 6.65678 7.13577 7.23599 8.84638 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.074047 B = 0.012047 C = 0.011508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.046605 B = 2323.624004 C = 2432.404567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.073 3.927 3 H 0.089 0.911 4 C -0.532 4.532 5 H 0.035 0.965 6 C 0.021 3.979 7 N -0.942 5.942 8 Si 0.950 3.050 9 H -0.261 1.261 10 H -0.301 1.301 11 H -0.231 1.231 12 C 0.151 3.849 13 C -0.362 4.362 14 C 0.478 3.522 15 O -0.588 6.588 16 N -0.545 5.545 17 H 0.470 0.530 18 O -0.001 6.001 19 H 0.076 0.924 20 H 0.059 0.941 21 H 0.050 0.950 22 H 0.270 0.730 23 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.240 2.150 -7.078 9.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.053 3.947 3 H 0.106 0.894 4 C -0.569 4.569 5 H 0.054 0.946 6 C -0.178 4.178 7 N -0.580 5.580 8 Si 0.775 3.225 9 H -0.187 1.187 10 H -0.229 1.229 11 H -0.154 1.154 12 C 0.094 3.906 13 C -0.385 4.385 14 C 0.279 3.721 15 O -0.475 6.475 16 N -0.237 5.237 17 H 0.325 0.675 18 O -0.014 6.014 19 H 0.094 0.906 20 H 0.079 0.921 21 H 0.068 0.932 22 H 0.079 0.921 23 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -5.023 1.928 -7.363 9.119 hybrid contribution -0.055 -0.192 0.410 0.456 sum -5.077 1.736 -6.952 8.782 Atomic orbital electron populations 1.22160 0.94661 1.02593 1.01420 1.18340 0.94870 0.95754 0.85727 0.89353 1.20925 1.32732 1.13350 0.89937 0.94645 1.25847 0.96887 1.00154 0.94878 1.70023 1.46789 1.42334 0.98902 0.85844 0.79034 0.79442 0.78182 1.18653 1.22932 1.15369 1.24146 0.91471 0.79891 0.95078 1.22804 1.12921 1.03921 0.98820 1.18471 0.81613 0.84508 0.87520 1.90894 1.46196 1.83668 1.26777 1.43592 1.48941 1.16882 1.14237 0.67543 1.84014 1.61453 1.29905 1.26026 0.90562 0.92140 0.93196 0.92100 0.78967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.19 8.65 71.98 0.62 -4.56 14 2 C 0.07 2.88 2.31 -12.29 -0.03 2.86 14 3 H 0.09 3.28 7.18 -2.38 -0.02 3.26 14 4 C -0.53 -27.31 9.13 25.60 0.23 -27.08 14 5 H 0.04 2.08 7.98 -2.91 -0.02 2.05 14 6 C 0.02 1.11 5.45 84.65 0.46 1.57 14 7 N -0.94 -54.93 13.96 21.45 0.30 -54.63 14 8 Si 0.95 39.03 24.37 68.60 1.67 40.70 14 9 H -0.26 -10.09 6.86 99.48 0.68 -9.41 14 10 H -0.30 -12.76 7.11 99.48 0.71 -12.06 14 11 H -0.23 -8.22 6.54 99.48 0.65 -7.57 14 12 C 0.15 5.60 5.87 25.04 0.15 5.75 14 13 C -0.36 -12.86 11.06 22.49 0.25 -12.62 14 14 C 0.48 17.80 8.48 85.10 0.72 18.52 14 15 O -0.59 -25.27 18.08 -5.45 -0.10 -25.37 14 16 N -0.54 -17.00 6.80 -179.69 -1.22 -18.23 14 17 H 0.47 10.80 8.96 -92.71 -0.83 9.97 14 18 O 0.00 -0.04 11.14 75.36 0.84 0.80 14 19 H 0.08 2.08 8.14 -2.38 -0.02 2.06 14 20 H 0.06 2.08 8.14 -2.39 -0.02 2.06 14 21 H 0.05 1.75 3.25 -2.38 -0.01 1.75 14 22 H 0.27 14.72 8.31 -92.71 -0.77 13.95 14 23 H 0.19 5.99 8.06 -2.91 -0.02 5.96 14 Total: -1.00 -64.50 205.84 4.23 -60.28 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 0.33 Total: 12.02 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 2.41 Total: -15.56 kcal Atomic # 7 Polarization: -71.94 SS G_CDS: -0.92 Total: -72.86 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: 0.74 Total: -24.57 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 1.67 Total: 40.70 kcal Total: -64.50 4.23 -60.28 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260820503.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.646 kcal (2) G-P(sol) polarization free energy of solvation -64.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds