Wall clock time and date at job start Mon Mar 30 2020 02:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00388 * 2 1 4 4 H 1.48498 * 109.47452 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47187 * 300.00345 * 3 2 1 6 6 H 1.48504 * 109.47087 * 59.99766 * 3 2 1 7 7 C 1.37879 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00392 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99992 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.36235 * 116.99793 * 180.02562 * 10 9 7 12 12 C 1.40112 * 126.05403 * 0.02562 * 11 10 9 13 13 N 1.30863 * 108.35754 * 179.97438 * 12 11 10 14 14 N 1.40078 * 108.32267 * 0.02562 * 13 12 11 15 15 N 1.36599 * 126.07927 * 179.97438 * 14 13 12 16 16 C 1.35589 * 126.04918 * 179.71253 * 11 10 9 17 17 H 0.97005 * 120.00047 * 359.97438 * 1 2 3 18 18 H 1.09004 * 109.46789 * 59.99988 * 9 7 2 19 19 H 1.08999 * 109.47285 * 299.99845 * 9 7 2 20 20 H 1.08002 * 125.81777 * 359.93111 * 12 11 10 21 21 H 1.00898 * 111.00167 * 90.02313 * 15 14 13 22 22 H 1.00901 * 111.00264 * 213.97771 * 15 14 13 23 23 H 1.07999 * 126.21012 * 0.02562 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 2.1795 -3.5854 0.0005 11 6 1.6587 -4.8443 0.0000 12 6 0.2968 -5.1732 -0.0011 13 7 0.1878 -6.4773 -0.0019 14 7 1.4763 -7.0269 -0.0007 15 7 1.7831 -8.3580 -0.0006 16 6 2.3667 -6.0006 -0.0056 17 1 -0.4850 0.8401 0.0004 18 1 0.6246 -2.5571 -0.8897 19 1 0.6239 -2.5568 0.8903 20 1 -0.5232 -4.4704 -0.0006 21 1 1.8655 -8.7102 -0.9425 22 1 2.6250 -8.5350 0.5266 23 1 3.4430 -6.0897 -0.0100 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260820871.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:46 Heat of formation + Delta-G solvation = 66.293860 kcal Electronic energy + Delta-G solvation = -10494.426890 eV Core-core repulsion = 8346.116393 eV Total energy + Delta-G solvation = -2148.310497 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.075 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.84120 -37.16184 -34.59762 -32.84077 -29.66772 -27.83454 -26.78125 -23.01133 -21.20305 -20.21909 -17.88743 -16.88090 -16.57385 -15.50306 -14.68089 -14.62651 -14.17990 -13.55267 -13.00452 -12.35485 -11.61523 -11.07906 -10.97102 -10.67617 -10.28669 -10.14845 -9.83682 -9.24654 -8.97591 -8.55632 -7.22492 -6.21563 -4.24572 2.10604 2.30303 3.24748 3.29118 3.31384 3.37283 4.21032 4.53685 4.68903 5.15752 5.28974 5.57751 5.90183 6.16276 6.51697 6.80444 6.98620 7.23931 7.70470 7.90522 7.96417 8.02954 8.54981 8.90194 9.40523 10.89863 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.123343 B = 0.008199 C = 0.007728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 226.954873 B = 3414.248616 C = 3622.175430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.913 3.087 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.521 4.521 8 H 0.070 0.930 9 C 0.197 3.803 10 O -0.309 6.309 11 C 0.021 3.979 12 C -0.007 4.007 13 N -0.246 5.246 14 N -0.227 5.227 15 N -0.566 5.566 16 C -0.052 4.052 17 H 0.266 0.734 18 H 0.018 0.982 19 H 0.018 0.982 20 H 0.195 0.805 21 H 0.354 0.646 22 H 0.370 0.630 23 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.016 -10.276 -0.686 11.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.559 4.559 8 H 0.088 0.912 9 C 0.124 3.876 10 O -0.221 6.221 11 C -0.036 4.036 12 C -0.195 4.195 13 N -0.071 5.071 14 N -0.104 5.104 15 N -0.196 5.196 16 C -0.195 4.195 17 H 0.076 0.924 18 H 0.036 0.964 19 H 0.036 0.964 20 H 0.212 0.788 21 H 0.172 0.828 22 H 0.187 0.813 23 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.657 -11.235 -0.320 11.549 hybrid contribution 1.647 1.742 -0.466 2.442 sum 4.303 -9.493 -0.787 10.453 Atomic orbital electron populations 1.69960 1.06103 1.27426 1.49784 1.24937 0.95048 0.99511 0.94821 0.86205 0.79942 0.82179 0.77734 1.19413 1.20711 1.20705 1.21011 0.94257 0.88815 1.51860 0.91196 1.20560 0.88616 0.81771 0.96654 1.86094 1.37090 1.09962 1.88985 1.18773 0.90957 0.87623 1.06213 1.24356 0.97711 0.92828 1.04566 1.77250 0.98329 1.08825 1.22657 1.46598 1.03699 0.99160 1.60985 1.58951 1.44420 0.95476 1.20720 1.21737 0.96281 0.86824 1.14687 0.92429 0.96425 0.96393 0.78848 0.82839 0.81311 0.80781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 13.29 55.43 0.74 -25.25 14 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 14 3 Si 0.91 21.28 29.54 -169.99 -5.02 16.26 14 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 14 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 14 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 14 7 C -0.52 -14.94 9.43 -34.44 -0.32 -15.26 14 8 H 0.07 1.98 7.81 -52.49 -0.41 1.57 14 9 C 0.20 5.26 4.84 36.01 0.17 5.44 14 10 O -0.31 -7.57 10.21 -20.49 -0.21 -7.77 14 11 C 0.02 0.44 6.96 -39.83 -0.28 0.16 14 12 C -0.01 -0.14 11.07 -17.26 -0.19 -0.33 14 13 N -0.25 -4.69 12.68 30.68 0.39 -4.30 14 14 N -0.23 -3.69 4.74 30.67 0.15 -3.54 14 15 N -0.57 -6.42 10.63 60.35 0.64 -5.78 14 16 C -0.05 -0.89 11.69 -16.71 -0.20 -1.09 14 17 H 0.27 7.21 8.31 -40.82 -0.34 6.87 14 18 H 0.02 0.49 8.10 -51.93 -0.42 0.07 14 19 H 0.02 0.50 8.10 -51.93 -0.42 0.08 14 20 H 0.19 3.64 7.69 -52.49 -0.40 3.24 14 21 H 0.35 3.12 9.21 -181.37 -1.67 1.45 14 22 H 0.37 2.95 9.07 -181.36 -1.64 1.31 14 23 H 0.18 2.35 8.06 -52.49 -0.42 1.93 14 LS Contribution 218.20 15.07 3.29 3.29 Total: -1.00 -32.49 218.20 -5.47 -37.96 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -4.53 Total: -1.34 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -0.91 Total: -9.53 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 1.91 Total: -38.87 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.21 Total: -7.77 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -32.49 -5.47 -37.96 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260820871.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.254 kcal (2) G-P(sol) polarization free energy of solvation -32.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds