Wall clock time and date at job start Mon Mar 30 2020 02:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00388 * 2 1 4 4 H 1.48498 * 109.47452 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47187 * 300.00345 * 3 2 1 6 6 H 1.48504 * 109.47087 * 59.99766 * 3 2 1 7 7 C 1.37879 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00392 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99992 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.36235 * 116.99793 * 180.02562 * 10 9 7 12 12 C 1.40112 * 126.05403 * 0.02562 * 11 10 9 13 13 N 1.30863 * 108.35754 * 179.97438 * 12 11 10 14 14 N 1.40078 * 108.32267 * 0.02562 * 13 12 11 15 15 N 1.36599 * 126.07927 * 179.97438 * 14 13 12 16 16 C 1.35589 * 126.04918 * 179.71253 * 11 10 9 17 17 H 0.97005 * 120.00047 * 359.97438 * 1 2 3 18 18 H 1.09004 * 109.46789 * 59.99988 * 9 7 2 19 19 H 1.08999 * 109.47285 * 299.99845 * 9 7 2 20 20 H 1.08002 * 125.81777 * 359.93111 * 12 11 10 21 21 H 1.00898 * 111.00167 * 90.02313 * 15 14 13 22 22 H 1.00901 * 111.00264 * 213.97771 * 15 14 13 23 23 H 1.07999 * 126.21012 * 0.02562 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 2.1795 -3.5854 0.0005 11 6 1.6587 -4.8443 0.0000 12 6 0.2968 -5.1732 -0.0011 13 7 0.1878 -6.4773 -0.0019 14 7 1.4763 -7.0269 -0.0007 15 7 1.7831 -8.3580 -0.0006 16 6 2.3667 -6.0006 -0.0056 17 1 -0.4850 0.8401 0.0004 18 1 0.6246 -2.5571 -0.8897 19 1 0.6239 -2.5568 0.8903 20 1 -0.5232 -4.4704 -0.0006 21 1 1.8655 -8.7102 -0.9425 22 1 2.6250 -8.5350 0.5266 23 1 3.4430 -6.0897 -0.0100 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260820871.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:46 Heat of formation + Delta-G solvation = 41.481489 kcal Electronic energy + Delta-G solvation = -10495.502835 eV Core-core repulsion = 8346.116393 eV Total energy + Delta-G solvation = -2149.386442 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.075 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.28908 -38.89456 -35.88408 -34.94922 -31.21797 -29.59587 -28.39845 -25.04335 -22.60271 -21.78626 -19.33309 -18.67675 -17.99280 -17.13717 -16.60321 -16.34229 -15.70224 -15.25086 -14.57102 -14.17289 -13.33487 -12.92960 -12.91016 -12.29398 -12.13151 -11.92594 -11.34191 -11.14160 -10.69058 -10.24580 -8.80562 -8.35020 -6.48365 0.69426 1.05923 1.42616 1.43818 1.58499 1.72446 2.32300 2.82658 2.99896 3.61074 3.93805 4.07170 4.55259 4.73040 4.88275 5.08123 5.19204 5.54838 5.82835 5.88608 6.49185 6.54617 6.77626 6.88150 7.23792 8.77500 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.123343 B = 0.008199 C = 0.007728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 226.954873 B = 3414.248616 C = 3622.175430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.988 3.012 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.553 4.553 8 H 0.067 0.933 9 C 0.214 3.786 10 O -0.324 6.324 11 C -0.038 4.038 12 C -0.018 4.018 13 N -0.265 5.265 14 N -0.215 5.215 15 N -0.563 5.563 16 C -0.013 4.013 17 H 0.273 0.727 18 H -0.001 1.001 19 H -0.001 1.001 20 H 0.188 0.812 21 H 0.375 0.625 22 H 0.392 0.608 23 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.518 -10.937 -0.731 12.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.811 3.189 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.591 4.591 8 H 0.085 0.915 9 C 0.141 3.859 10 O -0.237 6.237 11 C -0.093 4.093 12 C -0.203 4.203 13 N -0.092 5.092 14 N -0.089 5.089 15 N -0.199 5.199 16 C -0.158 4.158 17 H 0.082 0.918 18 H 0.017 0.983 19 H 0.017 0.983 20 H 0.205 0.795 21 H 0.195 0.805 22 H 0.213 0.787 23 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 4.153 -11.950 -0.368 12.656 hybrid contribution 1.207 1.688 -0.451 2.123 sum 5.360 -10.262 -0.818 11.606 Atomic orbital electron populations 1.70067 1.07741 1.28871 1.49826 1.25965 0.96020 1.03380 0.93667 0.85060 0.78660 0.76954 0.78266 1.18639 1.19648 1.19680 1.21352 0.94384 0.90201 1.53131 0.91484 1.20114 0.88419 0.82628 0.94780 1.85997 1.36536 1.10979 1.90201 1.19173 0.92134 0.87236 1.10779 1.24279 0.97554 0.93299 1.05209 1.77212 0.99909 1.08274 1.23771 1.46844 1.02808 1.00955 1.58309 1.59072 1.46069 0.92058 1.22672 1.22354 0.97875 0.85519 1.10050 0.91827 0.98271 0.98332 0.79504 0.80548 0.78734 0.76720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.63 13.29 21.45 0.28 -54.34 14 2 C 0.01 0.50 5.46 84.66 0.46 0.96 14 3 Si 0.99 43.41 29.54 68.60 2.03 45.44 14 4 H -0.26 -11.12 7.11 99.48 0.71 -10.42 14 5 H -0.27 -11.43 7.11 99.48 0.71 -10.72 14 6 H -0.27 -11.45 7.11 99.48 0.71 -10.75 14 7 C -0.55 -32.37 9.43 25.60 0.24 -32.13 14 8 H 0.07 3.85 7.81 -2.91 -0.02 3.83 14 9 C 0.21 11.95 4.84 71.24 0.34 12.29 14 10 O -0.32 -16.24 10.21 -96.23 -0.98 -17.22 14 11 C -0.04 -1.57 6.96 22.11 0.15 -1.42 14 12 C -0.02 -0.72 11.07 85.29 0.94 0.22 14 13 N -0.27 -9.95 12.68 -56.85 -0.72 -10.67 14 14 N -0.21 -6.44 4.74 -56.88 -0.27 -6.71 14 15 N -0.56 -10.73 10.63 37.02 0.39 -10.33 14 16 C -0.01 -0.40 11.69 83.45 0.98 0.58 14 17 H 0.27 14.84 8.31 -92.70 -0.77 14.07 14 18 H 0.00 -0.03 8.10 -2.39 -0.02 -0.05 14 19 H 0.00 -0.07 8.10 -2.39 -0.02 -0.09 14 20 H 0.19 7.55 7.69 -2.91 -0.02 7.53 14 21 H 0.37 5.14 9.21 -210.56 -1.94 3.20 14 22 H 0.39 4.55 9.07 -210.56 -1.91 2.64 14 23 H 0.22 4.87 8.06 -2.91 -0.02 4.85 14 Total: -1.00 -70.46 218.20 1.25 -69.21 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -2.60 Total: 4.11 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: 3.12 Total: -19.49 kcal Atomic # 7 Polarization: -81.73 SS G_CDS: -0.31 Total: -82.05 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.98 Total: -17.22 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -70.46 1.25 -69.21 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260820871.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.695 kcal (2) G-P(sol) polarization free energy of solvation -70.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds