Wall clock time and date at job start Mon Mar 30 2020 01:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47166 * 2 1 4 4 C 1.53000 * 109.47252 * 239.99492 * 2 1 3 5 5 C 1.53006 * 109.46883 * 119.99885 * 2 1 3 6 6 H 1.09000 * 109.47444 * 293.38580 * 5 2 1 7 7 C 1.50704 * 109.47088 * 53.38822 * 5 2 1 8 8 H 1.08001 * 119.99590 * 84.22245 * 7 5 2 9 9 C 1.37874 * 120.00093 * 264.22340 * 7 5 2 10 10 N 1.31517 * 119.99993 * 341.14341 * 9 7 5 11 11 Si 1.86797 * 119.99997 * 161.13847 * 9 7 5 12 12 H 1.48499 * 109.47190 * 90.00457 * 11 9 7 13 13 H 1.48498 * 109.47114 * 210.00082 * 11 9 7 14 14 H 1.48498 * 109.46984 * 329.99945 * 11 9 7 15 15 C 1.53004 * 109.46933 * 173.38877 * 5 2 1 16 16 C 1.52990 * 117.49838 * 135.17353 * 15 5 2 17 17 C 1.52996 * 117.50093 * 66.50943 * 15 5 2 18 18 H 1.08999 * 109.46667 * 299.84569 * 1 2 3 19 19 H 1.08994 * 109.47179 * 59.84527 * 1 2 3 20 20 H 1.08996 * 109.46930 * 179.84791 * 1 2 3 21 21 H 1.09003 * 109.47040 * 192.30614 * 3 2 1 22 22 H 1.08999 * 109.47138 * 312.30931 * 3 2 1 23 23 H 1.09004 * 109.47035 * 72.31537 * 3 2 1 24 24 H 1.08995 * 109.47522 * 300.00480 * 4 2 1 25 25 H 1.09005 * 109.46433 * 60.00368 * 4 2 1 26 26 H 1.08999 * 109.47271 * 180.02562 * 4 2 1 27 27 H 0.97004 * 119.99810 * 355.98116 * 10 9 7 28 28 H 1.09008 * 115.54726 * 280.84214 * 15 5 2 29 29 H 1.08998 * 117.50156 * 359.97438 * 16 15 5 30 30 H 1.09002 * 117.49843 * 145.02038 * 16 15 5 31 31 H 1.08993 * 117.50367 * 214.97726 * 17 15 5 32 32 H 1.08999 * 117.49806 * 359.97438 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 2.0400 -0.7213 1.2493 6 1 1.7765 -0.1437 2.1354 7 6 1.4085 -2.0870 1.3338 8 1 1.8393 -2.9156 0.7913 9 6 0.2809 -2.2787 2.1037 10 7 -0.0326 -1.4086 3.0388 11 14 -0.8017 -3.7740 1.8184 12 1 -0.3318 -4.8953 2.6710 13 1 -2.2064 -3.4419 2.1673 14 1 -0.7277 -4.1734 0.3900 15 6 3.5610 -0.8667 1.1691 16 6 4.3691 -0.5414 2.4268 17 6 4.3973 0.4130 1.2303 18 1 -0.3632 0.5114 0.8914 19 1 -0.3633 0.5162 -0.8885 20 1 -0.3633 -1.0276 -0.0027 21 1 3.1078 1.4503 -0.2190 22 1 1.5090 2.0156 -0.7600 23 1 1.8668 1.8891 0.9791 24 1 1.6767 -1.7490 -1.2492 25 1 1.6767 -0.2075 -2.1392 26 1 3.1301 -0.7218 -1.2489 27 1 0.5597 -0.6637 3.2264 28 1 3.9231 -1.6746 0.5331 29 1 3.8172 -0.2233 3.3113 30 1 5.2631 -1.1349 2.6181 31 1 5.3097 0.4470 0.6351 32 1 3.8639 1.3586 1.3273 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260828435.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:42 Heat of formation + Delta-G solvation = 3.033009 kcal Electronic energy + Delta-G solvation = -11868.384707 eV Core-core repulsion = 10022.130363 eV Total energy + Delta-G solvation = -1846.254345 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.24601 -34.59863 -32.44735 -27.43660 -26.26928 -26.17455 -23.10881 -21.55394 -19.85727 -18.01429 -16.47968 -14.63723 -14.10884 -13.67587 -13.40735 -13.22692 -12.57488 -12.04775 -11.55185 -11.41891 -11.03590 -10.84550 -10.63940 -10.53597 -10.14438 -10.04002 -9.99360 -9.73154 -9.61872 -9.01870 -8.89195 -8.41216 -7.96511 -6.29615 -3.89413 3.46011 3.49868 3.65193 4.56517 4.72733 5.36320 5.58840 5.83779 5.89996 5.96144 6.02797 6.06900 6.24598 6.39718 6.43993 6.53723 6.63921 6.70661 6.73094 6.80882 6.86234 6.94908 6.99086 7.24602 7.38400 7.49963 7.64763 7.69933 8.38339 8.55783 8.98970 9.74656 11.07642 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.040124 B = 0.017164 C = 0.014557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.664288 B = 1630.956439 C = 1922.979583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.058 4.058 3 C -0.147 4.147 4 C -0.124 4.124 5 C 0.068 3.932 6 H 0.036 0.964 7 C -0.587 4.587 8 H 0.047 0.953 9 C 0.033 3.967 10 N -0.905 5.905 11 Si 1.049 2.951 12 H -0.291 1.291 13 H -0.284 1.284 14 H -0.287 1.287 15 C -0.105 4.105 16 C -0.188 4.188 17 C -0.210 4.210 18 H 0.042 0.958 19 H 0.021 0.979 20 H 0.067 0.933 21 H 0.057 0.943 22 H 0.033 0.967 23 H 0.042 0.958 24 H 0.058 0.942 25 H 0.027 0.973 26 H 0.041 0.959 27 H 0.270 0.730 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.974 2.534 -4.779 6.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.059 4.059 3 C -0.204 4.204 4 C -0.181 4.181 5 C 0.049 3.951 6 H 0.055 0.945 7 C -0.625 4.625 8 H 0.065 0.935 9 C -0.172 4.172 10 N -0.541 5.541 11 Si 0.878 3.122 12 H -0.218 1.218 13 H -0.210 1.210 14 H -0.214 1.214 15 C -0.123 4.123 16 C -0.225 4.225 17 C -0.247 4.247 18 H 0.061 0.939 19 H 0.040 0.960 20 H 0.086 0.914 21 H 0.076 0.924 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.077 0.923 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.562 1.805 -4.283 5.307 hybrid contribution 1.516 0.694 -0.454 1.728 sum 4.078 2.498 -4.737 6.732 Atomic orbital electron populations 1.21676 0.95479 1.02215 0.98337 1.20651 0.95104 0.92659 0.97436 1.22232 1.00633 0.97696 0.99801 1.21719 0.99489 1.00856 0.96034 1.18596 0.87332 0.96476 0.92691 0.94540 1.21707 1.13909 0.94576 1.32302 0.93498 1.25589 0.97068 1.02064 0.92523 1.70793 1.40522 1.15212 1.27588 0.83877 0.76806 0.75666 0.75853 1.21754 1.20991 1.21351 1.22529 0.96467 0.95437 0.97906 1.22836 1.02324 1.04014 0.93356 1.23208 1.02279 0.96356 1.02844 0.93858 0.96005 0.91426 0.92430 0.94794 0.93879 0.92258 0.95389 0.93997 0.91824 0.89675 0.89673 0.90542 0.90674 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 7.75 37.16 0.29 -2.39 16 2 C -0.06 -1.24 0.58 -154.50 -0.09 -1.33 16 3 C -0.15 -2.75 6.99 37.16 0.26 -2.49 16 4 C -0.12 -2.45 7.90 37.16 0.29 -2.16 16 5 C 0.07 1.62 1.59 -91.76 -0.15 1.47 16 6 H 0.04 0.96 5.72 -51.93 -0.30 0.67 16 7 C -0.59 -15.66 6.32 -34.44 -0.22 -15.88 16 8 H 0.05 1.28 7.85 -52.49 -0.41 0.87 16 9 C 0.03 0.90 4.06 -17.82 -0.07 0.83 16 10 N -0.91 -26.37 13.60 55.43 0.75 -25.62 16 11 Si 1.05 24.80 29.94 -169.99 -5.09 19.71 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 15 C -0.11 -2.23 3.66 -90.62 -0.33 -2.56 16 16 C -0.19 -3.67 10.18 -26.70 -0.27 -3.95 16 17 C -0.21 -3.80 8.31 -26.69 -0.22 -4.02 16 18 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 19 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 20 H 0.07 1.63 6.40 -51.93 -0.33 1.30 16 21 H 0.06 1.00 5.44 -51.93 -0.28 0.72 16 22 H 0.03 0.58 8.09 -51.93 -0.42 0.16 16 23 H 0.04 0.82 7.74 -51.93 -0.40 0.42 16 24 H 0.06 1.25 7.41 -51.93 -0.38 0.87 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.04 0.78 6.81 -51.93 -0.35 0.43 16 27 H 0.27 7.89 6.59 -40.82 -0.27 7.63 16 28 H 0.09 1.83 7.76 -51.92 -0.40 1.43 16 29 H 0.08 1.74 8.09 -51.93 -0.42 1.32 16 30 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.09 1.69 5.64 -51.93 -0.29 1.40 16 LS Contribution 246.45 15.07 3.71 3.71 Total: -1.00 -27.52 246.45 -6.31 -33.83 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -5.18 Total: 0.82 kcal Atomic # 6 Polarization: -31.95 SS G_CDS: -0.51 Total: -32.46 kcal Atomic # 7 Polarization: -26.37 SS G_CDS: 0.75 Total: -25.62 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.09 Total: 19.71 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -27.52 -6.31 -33.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260828435.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.867 kcal (2) G-P(sol) polarization free energy of solvation -27.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds