Wall clock time and date at job start Mon Mar 30 2020 02:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36066 * 127.89705 * 2 1 4 4 C 1.50700 * 126.46969 * 359.97438 * 3 2 1 5 5 C 1.50702 * 109.46869 * 84.71283 * 4 3 2 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99942 * 179.72213 * 5 4 3 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.34419 * 107.06906 * 179.72673 * 3 2 1 14 14 H 0.96994 * 124.10507 * 180.23858 * 13 3 2 15 15 O 1.20965 * 111.78330 * 0.23638 * 13 3 2 16 16 C 1.34187 * 110.91834 * 0.02562 * 15 13 3 17 17 O 1.22010 * 126.98708 * 180.02562 * 16 15 13 18 18 H 1.08994 * 109.46913 * 89.99987 * 1 2 3 19 19 H 1.09000 * 109.47058 * 210.00088 * 1 2 3 20 20 H 1.08998 * 109.47174 * 330.00107 * 1 2 3 21 21 H 1.09004 * 109.47210 * 324.71576 * 4 3 2 22 22 H 1.08994 * 109.47551 * 204.71228 * 4 3 2 23 23 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3428 1.0737 0.0000 4 6 1.9367 2.5250 -0.0005 5 6 1.6748 2.9738 1.4141 6 1 1.7912 2.2779 2.2317 7 6 1.2926 4.2746 1.6650 8 7 1.1512 5.1221 0.6694 9 14 0.9754 4.8329 3.4191 10 1 1.2028 3.6975 4.3488 11 1 1.9000 5.9439 3.7598 12 1 -0.4283 5.3015 3.5434 13 7 3.5992 0.5958 0.0061 14 1 4.3930 1.1531 0.0108 15 8 3.6194 -0.6137 0.0051 16 6 2.3741 -1.1136 -0.0024 17 8 2.0560 -2.2915 -0.0049 18 1 -0.3633 0.0000 -1.0276 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5138 21 1 1.0312 2.6487 -0.5945 22 1 2.7379 3.1264 -0.4300 23 1 0.8820 6.0372 0.8459 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260848954.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:00 Heat of formation + Delta-G solvation = -9.465038 kcal Electronic energy + Delta-G solvation = -10872.699277 eV Core-core repulsion = 8688.810876 eV Total energy + Delta-G solvation = -2183.888401 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -45.98067 -38.98648 -36.92522 -34.69009 -32.79762 -30.55668 -28.77564 -25.68242 -23.08082 -21.93157 -19.96095 -19.17236 -18.37037 -17.14441 -16.44473 -16.33285 -14.57257 -14.50497 -14.45715 -14.08224 -13.69725 -13.40389 -13.00716 -12.76514 -12.65296 -12.04345 -11.85658 -11.17173 -10.97269 -10.61887 -8.96471 -8.25755 -6.37276 0.42112 1.28339 1.43583 1.48254 1.58017 1.74304 2.41049 2.54013 3.10304 3.72014 4.17493 4.31475 4.82417 4.96150 5.10974 5.24454 5.33952 5.38478 5.67968 5.84460 6.04128 6.56038 6.71751 6.96374 7.32541 8.84116 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.061340 B = 0.011268 C = 0.010939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.365660 B = 2484.281170 C = 2559.028996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.381 4.381 3 C 0.203 3.797 4 C 0.076 3.924 5 C -0.533 4.533 6 H 0.057 0.943 7 C 0.022 3.978 8 N -0.917 5.917 9 Si 0.960 3.040 10 H -0.270 1.270 11 H -0.278 1.278 12 H -0.279 1.279 13 N -0.485 5.485 14 H 0.478 0.522 15 O -0.066 6.066 16 C 0.449 3.551 17 O -0.544 6.544 18 H 0.065 0.935 19 H 0.058 0.942 20 H 0.067 0.933 21 H 0.049 0.951 22 H 0.042 0.958 23 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.058 -2.242 -0.452 3.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.391 4.391 3 C 0.084 3.916 4 C 0.038 3.962 5 C -0.571 4.571 6 H 0.075 0.925 7 C -0.178 4.178 8 N -0.556 5.556 9 Si 0.786 3.214 10 H -0.194 1.194 11 H -0.203 1.203 12 H -0.205 1.205 13 N -0.146 5.146 14 H 0.333 0.667 15 O -0.089 6.089 16 C 0.305 3.695 17 O -0.441 6.441 18 H 0.084 0.916 19 H 0.077 0.923 20 H 0.086 0.914 21 H 0.067 0.933 22 H 0.060 0.940 23 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.260 -2.760 -0.499 4.301 hybrid contribution 0.170 0.538 0.743 0.933 sum 3.430 -2.222 0.244 4.094 Atomic orbital electron populations 1.19673 0.86502 1.01982 1.01733 1.20910 0.99273 0.90902 1.28037 1.22411 0.83572 0.99088 0.86512 1.18040 0.98291 0.81649 0.98217 1.21129 1.47967 0.96109 0.91914 0.92453 1.25652 0.94589 0.96545 1.01049 1.70013 1.47173 1.05645 1.32743 0.85460 0.77926 0.78234 0.79816 1.19417 1.20314 1.20518 1.41167 1.09682 0.94179 1.69546 0.66707 1.84463 1.35573 1.07576 1.81275 1.19795 0.79703 0.90172 0.79783 1.90940 1.76331 1.18931 1.57866 0.91646 0.92294 0.91401 0.93330 0.93973 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.52 10.29 71.24 0.73 -0.78 14 2 C -0.38 -15.22 6.32 -19.66 -0.12 -15.35 14 3 C 0.20 7.70 6.42 41.66 0.27 7.97 14 4 C 0.08 3.27 5.30 29.10 0.15 3.42 14 5 C -0.53 -25.85 9.09 25.60 0.23 -25.62 14 6 H 0.06 2.81 7.74 -2.91 -0.02 2.79 14 7 C 0.02 1.10 5.46 84.66 0.46 1.56 14 8 N -0.92 -48.00 13.29 21.45 0.28 -47.72 14 9 Si 0.96 39.82 29.54 68.60 2.03 41.84 14 10 H -0.27 -11.05 7.11 99.48 0.71 -10.35 14 11 H -0.28 -11.24 7.11 99.48 0.71 -10.53 14 12 H -0.28 -11.50 7.11 99.48 0.71 -10.79 14 13 N -0.48 -15.21 6.70 -48.08 -0.32 -15.53 14 14 H 0.48 10.96 8.96 -92.71 -0.83 10.13 14 15 O -0.07 -2.34 11.25 93.25 1.05 -1.29 14 16 C 0.45 18.60 8.65 68.53 0.59 19.19 14 17 O -0.54 -25.49 18.07 17.73 0.32 -25.17 14 18 H 0.06 2.15 8.14 -2.39 -0.02 2.13 14 19 H 0.06 2.07 8.14 -2.39 -0.02 2.05 14 20 H 0.07 2.55 8.07 -2.39 -0.02 2.53 14 21 H 0.05 2.24 8.14 -2.38 -0.02 2.22 14 22 H 0.04 1.79 8.14 -2.39 -0.02 1.77 14 23 H 0.27 13.33 8.31 -92.70 -0.77 12.56 14 Total: -1.00 -59.02 217.35 6.08 -52.95 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 0.40 Total: 4.52 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 2.32 Total: -9.60 kcal Atomic # 7 Polarization: -63.21 SS G_CDS: -0.04 Total: -63.25 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: 1.37 Total: -26.46 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.84 kcal Total: -59.02 6.08 -52.95 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260848954.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.482 kcal (2) G-P(sol) polarization free energy of solvation -59.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds