Wall clock time and date at job start Mon Mar 30 2020 02:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86795 * 120.00100 * 2 1 4 4 H 1.48509 * 109.47104 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46824 * 299.99238 * 3 2 1 6 6 H 1.48490 * 109.47569 * 59.99489 * 3 2 1 7 7 C 1.38955 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99789 * 185.99854 * 7 2 1 9 9 N 1.37091 * 120.00158 * 5.99746 * 7 2 1 10 10 O 1.41724 * 124.12329 * 353.89441 * 9 7 2 11 11 C 1.43000 * 107.57887 * 197.46902 * 10 9 7 12 12 C 1.52005 * 122.51393 * 191.21574 * 11 10 9 13 13 C 1.52011 * 122.50205 * 117.82244 * 11 10 9 14 14 C 1.53706 * 103.83074 * 334.53569 * 11 10 9 15 15 C 1.34885 * 124.12405 * 173.88559 * 9 7 2 16 16 O 1.21287 * 126.22076 * 359.00509 * 15 9 7 17 17 H 0.97000 * 119.99897 * 0.02562 * 1 2 3 18 18 H 1.09003 * 117.52735 * 140.76967 * 12 11 10 19 19 H 1.09003 * 117.52373 * 355.59388 * 12 11 10 20 20 H 1.08993 * 117.52304 * 4.42393 * 13 11 10 21 21 H 1.09003 * 117.56788 * 219.22385 * 13 11 10 22 22 H 1.09000 * 110.79434 * 142.19141 * 14 11 10 23 23 H 1.09004 * 110.78981 * 265.46078 * 14 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3962 -1.2126 6 1 1.8893 2.3965 1.2123 7 6 2.0088 -1.2034 0.0005 8 1 3.0844 -1.2060 0.0983 9 7 1.3289 -2.3874 -0.1230 10 8 -0.0842 -2.4957 -0.1317 11 6 -0.4144 -3.8609 0.1365 12 6 -1.8208 -4.4107 -0.0374 13 6 -1.2091 -4.2836 1.3615 14 6 0.8251 -4.6382 -0.3347 15 6 1.9233 -3.5915 -0.2512 16 8 3.1173 -3.8005 -0.2927 17 1 -0.4850 0.8401 -0.0004 18 1 -1.9221 -5.4130 -0.4538 19 1 -2.6070 -3.7062 -0.3093 20 1 -1.5929 -3.4956 2.0093 21 1 -0.9089 -5.2024 1.8652 22 1 1.0352 -5.4735 0.3334 23 1 0.6965 -4.9873 -1.3593 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260900726.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:27 Heat of formation + Delta-G solvation = 16.851785 kcal Electronic energy + Delta-G solvation = -11167.424423 eV Core-core repulsion = 8984.677205 eV Total energy + Delta-G solvation = -2182.747217 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.44855 -36.60270 -34.89374 -32.77250 -30.30507 -28.92050 -24.58825 -22.18844 -20.41000 -19.59486 -17.97373 -15.58977 -15.07689 -14.95256 -14.47503 -14.39439 -13.51333 -12.74065 -12.27318 -11.98029 -11.73379 -11.21977 -11.13784 -11.01409 -10.76780 -10.41836 -10.24149 -9.67192 -8.85984 -8.51775 -7.69566 -6.39756 -3.94330 3.10571 3.19242 3.25961 3.40804 3.68224 4.10575 4.29027 4.82680 4.91979 5.14443 5.25864 5.46438 5.85091 5.90721 5.96894 6.16787 6.21941 6.44343 6.59533 7.38657 7.84916 8.33382 8.91439 9.25949 9.79570 10.67816 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.051490 B = 0.015738 C = 0.012613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.666998 B = 1778.730459 C = 2219.450458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.039 3.961 3 Si 0.930 3.070 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.319 4.319 8 H 0.128 0.872 9 N -0.293 5.293 10 O -0.070 6.070 11 C -0.002 4.002 12 C -0.151 4.151 13 C -0.183 4.183 14 C -0.131 4.131 15 C 0.429 3.571 16 O -0.575 6.575 17 H 0.270 0.730 18 H 0.102 0.898 19 H 0.101 0.899 20 H 0.101 0.899 21 H 0.097 0.903 22 H 0.093 0.907 23 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.157 -4.675 0.691 6.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.169 4.169 3 Si 0.756 3.244 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.444 4.444 8 H 0.145 0.855 9 N -0.056 5.056 10 O -0.071 6.071 11 C -0.044 4.044 12 C -0.189 4.189 13 C -0.221 4.221 14 C -0.172 4.172 15 C 0.218 3.782 16 O -0.461 6.461 17 H 0.080 0.920 18 H 0.121 0.879 19 H 0.120 0.880 20 H 0.119 0.881 21 H 0.115 0.885 22 H 0.112 0.888 23 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.895 -4.340 0.640 5.866 hybrid contribution -0.059 0.721 0.116 0.732 sum -3.954 -3.619 0.756 5.413 Atomic orbital electron populations 1.70002 1.05858 1.27524 1.44380 1.25415 0.95673 0.99764 0.96043 0.85805 0.79821 0.80793 0.78029 1.18858 1.20260 1.20423 1.19952 0.91793 0.80301 1.52351 0.85486 1.46081 0.92022 1.06803 1.60735 1.91342 1.04199 1.20220 1.91314 1.22128 0.93416 0.86754 1.02148 1.23023 0.94630 1.01672 0.99540 1.23309 1.04158 1.03094 0.91509 1.22150 0.93259 0.98692 1.03118 1.20173 0.88789 0.83239 0.86045 1.90572 1.14481 1.81880 1.59207 0.92038 0.87934 0.88016 0.88053 0.88461 0.88824 0.88441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.92 11.79 55.50 0.65 -23.27 14 2 C 0.04 1.07 5.50 -17.47 -0.10 0.97 14 3 Si 0.93 20.69 29.56 -169.99 -5.02 15.66 14 4 H -0.26 -5.77 7.11 56.52 0.40 -5.37 14 5 H -0.28 -6.06 7.11 56.52 0.40 -5.65 14 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 14 7 C -0.32 -9.25 9.97 -14.93 -0.15 -9.40 14 8 H 0.13 3.64 7.73 -52.48 -0.41 3.24 14 9 N -0.29 -8.26 3.78 -10.53 -0.04 -8.30 14 10 O -0.07 -1.87 10.15 -11.53 -0.12 -1.98 14 11 C 0.00 -0.05 3.28 -91.26 -0.30 -0.35 14 12 C -0.15 -2.34 10.42 -27.13 -0.28 -2.62 14 13 C -0.18 -3.05 10.42 -27.13 -0.28 -3.33 14 14 C -0.13 -2.63 6.86 -26.90 -0.18 -2.81 14 15 C 0.43 11.26 8.16 -10.32 -0.08 11.17 14 16 O -0.58 -16.51 17.69 5.55 0.10 -16.41 14 17 H 0.27 7.08 8.31 -40.82 -0.34 6.74 14 18 H 0.10 1.27 8.14 -51.93 -0.42 0.85 14 19 H 0.10 1.57 8.14 -51.93 -0.42 1.15 14 20 H 0.10 1.75 8.14 -51.93 -0.42 1.33 14 21 H 0.10 1.36 8.14 -51.93 -0.42 0.94 14 22 H 0.09 1.62 8.13 -51.93 -0.42 1.19 14 23 H 0.10 1.74 8.14 -51.93 -0.42 1.31 14 LS Contribution 213.77 15.07 3.22 3.22 Total: -1.00 -32.71 213.77 -4.66 -37.37 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -2.08 Total: 0.07 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -1.38 Total: -6.36 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: 0.61 Total: -31.57 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.02 Total: -18.40 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 3.22 Total: 3.22 kcal Total: -32.71 -4.66 -37.37 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260900726.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.226 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds