Wall clock time and date at job start Mon Mar 30 2020 02:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47233 * 2 1 4 4 C 1.52998 * 109.46762 * 119.99962 * 2 1 3 5 5 H 1.09001 * 115.56676 * 4.90743 * 4 2 1 6 6 C 1.53084 * 117.51157 * 219.20486 * 4 2 1 7 7 C 1.52996 * 117.49838 * 150.59819 * 4 2 1 8 8 H 1.08997 * 117.50124 * 214.99921 * 7 4 2 9 9 C 1.53005 * 117.49815 * 359.97438 * 7 4 2 10 10 H 1.08990 * 109.47020 * 17.53986 * 9 7 4 11 11 C 1.53004 * 109.46605 * 257.53894 * 9 7 4 12 12 C 1.50701 * 109.47271 * 137.54385 * 9 7 4 13 13 H 1.08001 * 119.99958 * 359.97438 * 12 9 7 14 14 C 1.37875 * 120.00259 * 179.97438 * 12 9 7 15 15 N 1.31522 * 119.99413 * 359.97438 * 14 12 9 16 16 Si 1.86790 * 120.00257 * 179.97438 * 14 12 9 17 17 H 1.48498 * 109.47236 * 179.97438 * 16 14 12 18 18 H 1.48497 * 109.47344 * 299.99852 * 16 14 12 19 19 H 1.48494 * 109.47443 * 59.99912 * 16 14 12 20 20 H 1.09000 * 109.47280 * 304.07248 * 1 2 3 21 21 H 1.08998 * 109.47113 * 64.07294 * 1 2 3 22 22 H 1.08994 * 109.47321 * 184.06816 * 1 2 3 23 23 H 1.09002 * 109.47025 * 239.99884 * 2 1 3 24 24 H 1.08998 * 109.46766 * 320.18816 * 3 2 1 25 25 H 1.08999 * 109.46916 * 80.18462 * 3 2 1 26 26 H 1.08993 * 109.46742 * 200.19093 * 3 2 1 27 27 H 1.08997 * 117.49164 * 145.03473 * 6 4 2 28 28 H 1.08996 * 117.53068 * 359.97438 * 6 4 2 29 29 H 1.08999 * 109.47563 * 293.16254 * 11 9 7 30 30 H 1.09000 * 109.47299 * 53.16926 * 11 9 7 31 31 H 1.09004 * 109.46684 * 173.16130 * 11 9 7 32 32 H 0.97000 * 119.99307 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.2730 -1.1791 1.8741 6 6 3.2676 -0.1360 1.9521 7 6 3.3901 -1.4342 1.1517 8 1 3.5113 -2.3613 1.7119 9 6 4.1267 -1.3719 -0.1879 10 1 3.7158 -0.5625 -0.7912 11 6 3.9519 -2.6994 -0.9282 12 6 5.5928 -1.1222 0.0561 13 1 5.9621 -1.0179 1.0656 14 6 6.4626 -1.0269 -1.0094 15 7 6.0128 -1.1543 -2.2387 16 14 8.2795 -0.7166 -0.7070 17 1 8.9947 -0.6575 -2.0071 18 1 8.4489 0.5723 0.0107 19 1 8.8397 -1.8186 0.1157 20 1 -0.3634 0.5757 0.8512 21 1 -0.3633 0.4493 -0.9242 22 1 -0.3633 -1.0250 0.0729 23 1 1.8934 -0.5139 -0.8900 24 1 1.4169 2.0482 -0.6580 25 1 1.9960 1.8434 1.0126 26 1 3.0705 1.4635 -0.3547 27 1 3.3076 -0.2091 3.0389 28 1 3.7123 0.7625 1.5244 29 1 4.4686 -3.4899 -0.3839 30 1 2.8909 -2.9397 -0.9977 31 1 4.3715 -2.6144 -1.9306 32 1 6.6247 -1.0869 -2.9884 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260962282.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:04 Heat of formation + Delta-G solvation = -3.272040 kcal Electronic energy + Delta-G solvation = -11452.490601 eV Core-core repulsion = 9605.962849 eV Total energy + Delta-G solvation = -1846.527752 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.19914 -33.78899 -32.23374 -29.68425 -26.75014 -25.02696 -22.66086 -22.07346 -19.50121 -17.90692 -16.16734 -14.79206 -14.60284 -14.19180 -13.67300 -12.58608 -12.27578 -12.16390 -11.77063 -11.46489 -11.10244 -10.93488 -10.79814 -10.68278 -10.43850 -10.31489 -10.07062 -9.90859 -9.40205 -9.06509 -8.78103 -8.37565 -8.23487 -5.90196 -3.94264 3.36112 3.40569 3.43454 4.47911 4.75465 5.32722 5.40596 5.50529 5.62659 5.84507 6.00371 6.01494 6.10058 6.24147 6.32808 6.43032 6.48516 6.56860 6.80098 6.83279 6.91107 6.98231 7.07148 7.13137 7.37055 7.48241 7.82973 8.12239 8.21244 8.57416 9.09147 9.69112 11.16171 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.051764 B = 0.011840 C = 0.011618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.790238 B = 2364.368075 C = 2409.437784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 C -0.145 4.145 4 C -0.165 4.165 5 H 0.085 0.915 6 C -0.178 4.178 7 C -0.115 4.115 8 H 0.081 0.919 9 C 0.066 3.934 10 H 0.037 0.963 11 C -0.132 4.132 12 C -0.503 4.503 13 H 0.053 0.947 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.888 3.112 17 H -0.289 1.289 18 H -0.278 1.278 19 H -0.279 1.279 20 H 0.047 0.953 21 H 0.048 0.952 22 H 0.049 0.951 23 H 0.081 0.919 24 H 0.042 0.958 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.025 0.975 30 H 0.006 0.994 31 H 0.076 0.924 32 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.081 1.984 3.852 8.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.085 4.085 3 C -0.202 4.202 4 C -0.183 4.183 5 H 0.103 0.897 6 C -0.215 4.215 7 C -0.133 4.133 8 H 0.099 0.901 9 C 0.047 3.953 10 H 0.055 0.945 11 C -0.189 4.189 12 C -0.541 4.541 13 H 0.071 0.929 14 C -0.141 4.141 15 N -0.533 5.533 16 Si 0.716 3.284 17 H -0.214 1.214 18 H -0.204 1.204 19 H -0.205 1.205 20 H 0.066 0.934 21 H 0.067 0.933 22 H 0.068 0.932 23 H 0.099 0.901 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.115 0.885 29 H 0.044 0.956 30 H 0.025 0.975 31 H 0.095 0.905 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.014 1.990 3.661 8.158 hybrid contribution 1.073 0.093 0.254 1.107 sum -5.941 2.083 3.916 7.414 Atomic orbital electron populations 1.21852 0.96249 1.00951 1.00728 1.20630 0.94037 0.95887 0.97920 1.21935 1.01689 0.95713 1.00836 1.22459 0.91417 1.05278 0.99181 0.89687 1.22966 1.01643 0.99874 0.97043 1.22648 0.96009 0.94020 1.00637 0.90120 1.18372 0.93892 0.94549 0.88445 0.94487 1.21744 0.95794 0.98170 1.03223 1.21136 0.92497 1.47991 0.92520 0.92855 1.24953 0.98349 0.95589 0.95257 1.69901 1.34626 1.50838 0.97914 0.86726 0.85749 0.78720 0.77180 1.21447 1.20413 1.20452 0.93370 0.93311 0.93179 0.90080 0.93856 0.92994 0.91704 0.90968 0.88510 0.95620 0.97520 0.90513 0.93182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.97 37.16 0.33 -1.67 16 2 C -0.07 -1.16 2.47 -90.62 -0.22 -1.39 16 3 C -0.14 -2.44 8.00 37.16 0.30 -2.15 16 4 C -0.17 -3.01 5.67 -90.58 -0.51 -3.53 16 5 H 0.08 1.42 7.93 -51.93 -0.41 1.01 16 6 C -0.18 -3.43 8.89 -26.69 -0.24 -3.67 16 7 C -0.11 -2.46 4.97 -90.62 -0.45 -2.91 16 8 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 9 C 0.07 1.64 1.89 -91.77 -0.17 1.47 16 10 H 0.04 0.98 5.19 -51.93 -0.27 0.71 16 11 C -0.13 -3.26 8.87 37.16 0.33 -2.93 16 12 C -0.50 -13.92 8.42 -34.44 -0.29 -14.21 16 13 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 14 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 15 N -0.89 -25.81 11.40 55.43 0.63 -25.18 16 16 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 20 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.08 1.62 6.41 -51.93 -0.33 1.28 16 24 H 0.04 0.65 7.98 -51.93 -0.41 0.23 16 25 H 0.05 0.82 7.21 -51.93 -0.37 0.45 16 26 H 0.06 1.25 7.04 -51.93 -0.37 0.89 16 27 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.10 1.96 6.34 -51.93 -0.33 1.63 16 29 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.08 2.07 6.28 -51.93 -0.33 1.74 16 32 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 253.11 15.07 3.81 3.81 Total: -1.00 -27.95 253.11 -6.92 -34.87 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -5.32 Total: -0.69 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: -1.02 Total: -29.43 kcal Atomic # 7 Polarization: -25.81 SS G_CDS: 0.63 Total: -25.18 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -27.95 -6.92 -34.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260962282.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.599 kcal (2) G-P(sol) polarization free energy of solvation -27.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds