Wall clock time and date at job start Mon Mar 30 2020 02:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47233 * 2 1 4 4 C 1.52998 * 109.46762 * 119.99962 * 2 1 3 5 5 H 1.09001 * 115.56676 * 4.90743 * 4 2 1 6 6 C 1.53084 * 117.51157 * 219.20486 * 4 2 1 7 7 C 1.52996 * 117.49838 * 150.59819 * 4 2 1 8 8 H 1.08997 * 117.50124 * 214.99921 * 7 4 2 9 9 C 1.53005 * 117.49815 * 359.97438 * 7 4 2 10 10 H 1.08990 * 109.47020 * 17.53986 * 9 7 4 11 11 C 1.53004 * 109.46605 * 257.53894 * 9 7 4 12 12 C 1.50701 * 109.47271 * 137.54385 * 9 7 4 13 13 H 1.08001 * 119.99958 * 359.97438 * 12 9 7 14 14 C 1.37875 * 120.00259 * 179.97438 * 12 9 7 15 15 N 1.31522 * 119.99413 * 359.97438 * 14 12 9 16 16 Si 1.86790 * 120.00257 * 179.97438 * 14 12 9 17 17 H 1.48498 * 109.47236 * 179.97438 * 16 14 12 18 18 H 1.48497 * 109.47344 * 299.99852 * 16 14 12 19 19 H 1.48494 * 109.47443 * 59.99912 * 16 14 12 20 20 H 1.09000 * 109.47280 * 304.07248 * 1 2 3 21 21 H 1.08998 * 109.47113 * 64.07294 * 1 2 3 22 22 H 1.08994 * 109.47321 * 184.06816 * 1 2 3 23 23 H 1.09002 * 109.47025 * 239.99884 * 2 1 3 24 24 H 1.08998 * 109.46766 * 320.18816 * 3 2 1 25 25 H 1.08999 * 109.46916 * 80.18462 * 3 2 1 26 26 H 1.08993 * 109.46742 * 200.19093 * 3 2 1 27 27 H 1.08997 * 117.49164 * 145.03473 * 6 4 2 28 28 H 1.08996 * 117.53068 * 359.97438 * 6 4 2 29 29 H 1.08999 * 109.47563 * 293.16254 * 11 9 7 30 30 H 1.09000 * 109.47299 * 53.16926 * 11 9 7 31 31 H 1.09004 * 109.46684 * 173.16130 * 11 9 7 32 32 H 0.97000 * 119.99307 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.2730 -1.1791 1.8741 6 6 3.2676 -0.1360 1.9521 7 6 3.3901 -1.4342 1.1517 8 1 3.5113 -2.3613 1.7119 9 6 4.1267 -1.3719 -0.1879 10 1 3.7158 -0.5625 -0.7912 11 6 3.9519 -2.6994 -0.9282 12 6 5.5928 -1.1222 0.0561 13 1 5.9621 -1.0179 1.0656 14 6 6.4626 -1.0269 -1.0094 15 7 6.0128 -1.1543 -2.2387 16 14 8.2795 -0.7166 -0.7070 17 1 8.9947 -0.6575 -2.0071 18 1 8.4489 0.5723 0.0107 19 1 8.8397 -1.8186 0.1157 20 1 -0.3634 0.5757 0.8512 21 1 -0.3633 0.4493 -0.9242 22 1 -0.3633 -1.0250 0.0729 23 1 1.8934 -0.5139 -0.8900 24 1 1.4169 2.0482 -0.6580 25 1 1.9960 1.8434 1.0126 26 1 3.0705 1.4635 -0.3547 27 1 3.3076 -0.2091 3.0389 28 1 3.7123 0.7625 1.5244 29 1 4.4686 -3.4899 -0.3839 30 1 2.8909 -2.9397 -0.9977 31 1 4.3715 -2.6144 -1.9306 32 1 6.6247 -1.0869 -2.9884 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260962282.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:04 Heat of formation + Delta-G solvation = -17.316444 kcal Electronic energy + Delta-G solvation = -11453.099612 eV Core-core repulsion = 9605.962849 eV Total energy + Delta-G solvation = -1847.136763 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.76956 -35.65633 -33.86873 -31.65020 -28.02325 -27.14632 -24.08662 -23.92206 -21.16456 -19.49441 -18.22991 -16.66906 -16.22109 -15.82671 -15.11461 -14.50223 -13.86950 -13.63845 -13.30593 -13.11110 -12.84166 -12.74794 -12.66761 -12.26219 -12.11885 -12.08183 -11.73084 -11.48405 -11.16990 -10.92375 -10.45208 -10.34747 -10.15504 -8.03866 -6.14892 1.41226 1.42126 1.49609 2.45098 3.17373 3.23565 3.92452 4.17162 4.25247 4.37605 4.51006 4.62340 4.84749 4.87152 4.91939 4.99262 5.03537 5.08221 5.13457 5.19137 5.33453 5.43716 5.45376 5.54221 5.57572 5.67448 5.71389 6.10793 6.16091 6.47095 6.96486 7.51653 9.00898 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.051764 B = 0.011840 C = 0.011618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.790238 B = 2364.368075 C = 2409.437784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.071 4.071 3 C -0.139 4.139 4 C -0.141 4.141 5 H 0.112 0.888 6 C -0.173 4.173 7 C -0.143 4.143 8 H 0.083 0.917 9 C 0.066 3.934 10 H 0.016 0.984 11 C -0.122 4.122 12 C -0.519 4.519 13 H 0.048 0.952 14 C 0.010 3.990 15 N -0.920 5.920 16 Si 0.948 3.052 17 H -0.285 1.285 18 H -0.273 1.273 19 H -0.274 1.274 20 H 0.065 0.935 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.049 0.951 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.028 0.972 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.020 0.980 30 H 0.027 0.973 31 H 0.049 0.951 32 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.018 2.355 5.085 9.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.090 4.090 3 C -0.196 4.196 4 C -0.159 4.159 5 H 0.130 0.870 6 C -0.210 4.210 7 C -0.162 4.162 8 H 0.101 0.899 9 C 0.048 3.952 10 H 0.034 0.966 11 C -0.180 4.180 12 C -0.557 4.557 13 H 0.066 0.934 14 C -0.188 4.188 15 N -0.560 5.560 16 Si 0.774 3.226 17 H -0.211 1.211 18 H -0.198 1.198 19 H -0.199 1.199 20 H 0.084 0.916 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.047 0.953 27 H 0.114 0.886 28 H 0.099 0.901 29 H 0.039 0.961 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.955 2.361 4.903 9.638 hybrid contribution 1.346 -0.019 -0.142 1.354 sum -6.609 2.342 4.761 8.475 Atomic orbital electron populations 1.21787 0.93215 1.01952 1.02111 1.20653 0.96572 0.95547 0.96203 1.21865 0.99824 0.96024 1.01887 1.22592 0.90724 1.03309 0.99265 0.87001 1.22981 1.02007 0.97859 0.98117 1.22442 0.98961 0.95341 0.99408 0.89921 1.18250 0.93042 0.93637 0.90288 0.96611 1.21598 0.96813 0.98119 1.01460 1.21489 0.94230 1.47762 0.92254 0.93397 1.25698 1.02445 0.95557 0.95102 1.70036 1.35847 1.51618 0.98540 0.85770 0.80911 0.78772 0.77152 1.21105 1.19795 1.19892 0.91583 0.92331 0.92458 0.93256 0.91963 0.91681 0.95267 0.88626 0.90058 0.96068 0.95416 0.93248 0.93291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 8.97 71.98 0.65 -2.74 16 2 C -0.07 -2.39 2.47 -10.79 -0.03 -2.41 16 3 C -0.14 -4.55 8.00 71.98 0.58 -3.98 16 4 C -0.14 -4.83 5.67 -10.77 -0.06 -4.89 16 5 H 0.11 3.28 7.93 -2.39 -0.02 3.26 16 6 C -0.17 -6.37 8.89 30.62 0.27 -6.10 16 7 C -0.14 -6.03 4.97 -10.79 -0.05 -6.08 16 8 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 9 C 0.07 3.36 1.89 -11.54 -0.02 3.34 16 10 H 0.02 0.87 5.19 -2.39 -0.01 0.86 16 11 C -0.12 -6.14 8.87 71.98 0.64 -5.50 16 12 C -0.52 -29.14 8.42 25.60 0.22 -28.93 16 13 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 14 C 0.01 0.55 5.30 84.65 0.45 1.00 16 15 N -0.92 -54.32 11.40 21.45 0.24 -54.08 16 16 Si 0.95 44.68 29.54 68.60 2.03 46.71 16 17 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 18 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 20 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 21 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.05 1.97 6.41 -2.39 -0.02 1.96 16 24 H 0.06 1.76 7.98 -2.39 -0.02 1.74 16 25 H 0.06 1.93 7.21 -2.39 -0.02 1.92 16 26 H 0.03 1.14 7.04 -2.39 -0.02 1.12 16 27 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 28 H 0.08 3.26 6.34 -2.39 -0.02 3.24 16 29 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.05 2.73 6.28 -2.39 -0.01 2.71 16 32 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -59.77 253.11 5.97 -53.80 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 1.06 Total: 9.86 kcal Atomic # 6 Polarization: -58.92 SS G_CDS: 2.63 Total: -56.29 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.24 Total: -54.08 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -59.77 5.97 -53.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260962282.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.485 kcal (2) G-P(sol) polarization free energy of solvation -59.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds