Wall clock time and date at job start Mon Mar 30 2020 02:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.46919 * 2 1 4 4 C 1.52996 * 109.46714 * 240.00300 * 2 1 3 5 5 H 1.09001 * 115.55359 * 46.53196 * 4 2 1 6 6 C 1.52997 * 117.50000 * 260.86228 * 4 2 1 7 7 C 1.53002 * 117.49574 * 192.20217 * 4 2 1 8 8 H 1.09005 * 117.49485 * 214.97808 * 7 4 2 9 9 C 1.52997 * 117.50009 * 359.97438 * 7 4 2 10 10 H 1.08994 * 109.47550 * 314.76939 * 9 7 4 11 11 C 1.53000 * 109.46896 * 74.76977 * 9 7 4 12 12 C 1.50697 * 109.46987 * 194.76620 * 9 7 4 13 13 H 1.07997 * 120.00309 * 353.95089 * 12 9 7 14 14 C 1.37880 * 119.99529 * 173.95690 * 12 9 7 15 15 N 1.31510 * 120.00249 * 359.97438 * 14 12 9 16 16 Si 1.86812 * 119.99714 * 179.97438 * 14 12 9 17 17 H 1.48499 * 109.46721 * 89.99674 * 16 14 12 18 18 H 1.48497 * 109.47057 * 209.99796 * 16 14 12 19 19 H 1.48498 * 109.46880 * 329.99826 * 16 14 12 20 20 H 1.09002 * 109.46785 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.46687 * 299.99380 * 1 2 3 22 22 H 1.08991 * 109.47135 * 59.99413 * 1 2 3 23 23 H 1.08991 * 109.47135 * 120.00587 * 2 1 3 24 24 H 1.08999 * 109.47145 * 68.01102 * 3 2 1 25 25 H 1.09001 * 109.47162 * 188.00719 * 3 2 1 26 26 H 1.08995 * 109.47624 * 308.01420 * 3 2 1 27 27 H 1.08997 * 117.50030 * 0.02562 * 6 4 2 28 28 H 1.09003 * 117.50389 * 145.00348 * 6 4 2 29 29 H 1.09000 * 109.47596 * 65.52042 * 11 9 7 30 30 H 1.08996 * 109.47591 * 185.52156 * 11 9 7 31 31 H 1.09008 * 109.46899 * 305.52500 * 11 9 7 32 32 H 0.97002 * 119.99993 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.5588 -0.4374 -2.1853 6 6 2.4786 -2.1787 -1.0941 7 6 3.5261 -1.0816 -1.2998 8 1 4.0225 -1.0353 -2.2691 9 6 4.3886 -0.6926 -0.0974 10 1 4.1587 0.3308 0.1988 11 6 4.0950 -1.6392 1.0682 12 6 5.8452 -0.7924 -0.4709 13 1 6.1300 -1.1946 -1.4318 14 6 6.8142 -0.3701 0.4144 15 7 6.4674 0.1201 1.5844 16 14 8.6199 -0.4944 -0.0482 17 1 9.0446 0.7573 -0.7250 18 1 9.4325 -0.6943 1.1785 19 1 8.8176 -1.6450 -0.9659 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3632 0.5137 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 1.8934 -0.5139 0.8899 24 1 1.7983 1.9133 0.9529 25 1 3.1206 1.4458 -0.1432 26 1 1.5645 1.9960 -0.8096 27 1 2.4035 -2.6239 -0.1020 28 1 2.2861 -2.8538 -1.9279 29 1 4.4162 -2.6476 0.8073 30 1 4.6350 -1.3037 1.9536 31 1 3.0246 -1.6408 1.2742 32 1 7.1492 0.4168 2.2073 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260962284.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:05 Heat of formation + Delta-G solvation = -11.937907 kcal Electronic energy + Delta-G solvation = -11485.035742 eV Core-core repulsion = 9638.132210 eV Total energy + Delta-G solvation = -1846.903532 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.94115 -35.49603 -34.04696 -31.48031 -27.93550 -27.33876 -24.52701 -23.66298 -20.83809 -19.71323 -18.41903 -16.66218 -16.20019 -15.69188 -14.94434 -14.46117 -14.18966 -13.72571 -13.52390 -12.93062 -12.85880 -12.75739 -12.58377 -12.31016 -12.13643 -11.90765 -11.81814 -11.52151 -10.97266 -10.82364 -10.59927 -10.38608 -9.98575 -8.07094 -6.16582 1.40189 1.40935 1.50915 2.44791 3.12515 3.24978 3.89910 4.16943 4.24218 4.36237 4.55697 4.63763 4.78060 4.87619 4.90899 5.00697 5.03152 5.07330 5.12414 5.23359 5.28890 5.39475 5.45533 5.56141 5.64680 5.70462 5.75194 6.11899 6.14109 6.47197 6.96610 7.49802 8.99753 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.060377 B = 0.011483 C = 0.010816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.643953 B = 2437.698934 C = 2588.160505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.071 4.071 3 C -0.147 4.147 4 C -0.140 4.140 5 H 0.106 0.894 6 C -0.179 4.179 7 C -0.146 4.146 8 H 0.077 0.923 9 C 0.060 3.940 10 H 0.029 0.971 11 C -0.120 4.120 12 C -0.528 4.528 13 H 0.046 0.954 14 C 0.011 3.989 15 N -0.919 5.919 16 Si 0.949 3.051 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.271 1.271 20 H 0.057 0.943 21 H 0.058 0.942 22 H 0.061 0.939 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.042 0.958 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.022 0.978 30 H 0.034 0.966 31 H 0.042 0.958 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.183 -0.740 -3.250 9.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.089 4.089 3 C -0.204 4.204 4 C -0.158 4.158 5 H 0.124 0.876 6 C -0.215 4.215 7 C -0.164 4.164 8 H 0.095 0.905 9 C 0.042 3.958 10 H 0.047 0.953 11 C -0.178 4.178 12 C -0.566 4.566 13 H 0.064 0.936 14 C -0.188 4.188 15 N -0.559 5.559 16 Si 0.775 3.225 17 H -0.202 1.202 18 H -0.209 1.209 19 H -0.195 1.195 20 H 0.076 0.924 21 H 0.077 0.923 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.081 0.919 27 H 0.110 0.890 28 H 0.115 0.885 29 H 0.041 0.959 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.107 -0.673 -3.091 9.641 hybrid contribution 1.378 -0.039 -0.059 1.380 sum -7.729 -0.712 -3.150 8.376 Atomic orbital electron populations 1.21735 0.93385 1.01930 1.02039 1.20738 0.96415 0.95524 0.96222 1.21904 1.01054 0.96197 1.01283 1.22410 0.96915 0.97019 0.99425 0.87564 1.23185 1.04129 0.91533 1.02701 1.22559 0.90388 1.03743 0.99745 0.90477 1.18335 0.92040 0.95249 0.90180 0.95325 1.21804 0.97535 0.98169 1.00248 1.21631 0.93002 1.40709 1.01274 0.93575 1.25702 1.02750 0.95191 0.95109 1.70049 1.34129 1.43436 1.08283 0.85702 0.80733 0.78480 0.77623 1.20202 1.20949 1.19531 0.92351 0.92270 0.91959 0.92266 0.92937 0.93867 0.91939 0.89048 0.88516 0.95908 0.94656 0.93904 0.93214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 9.19 71.99 0.66 -2.65 16 2 C -0.07 -2.30 2.36 -10.79 -0.03 -2.33 16 3 C -0.15 -5.01 8.93 71.98 0.64 -4.37 16 4 C -0.14 -4.74 5.00 -10.79 -0.05 -4.79 16 5 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 6 C -0.18 -6.24 9.27 30.62 0.28 -5.96 16 7 C -0.15 -6.17 5.63 -10.77 -0.06 -6.23 16 8 H 0.08 3.35 7.87 -2.38 -0.02 3.33 16 9 C 0.06 3.04 1.80 -11.54 -0.02 3.02 16 10 H 0.03 1.58 4.85 -2.39 -0.01 1.57 16 11 C -0.12 -5.85 7.45 71.98 0.54 -5.32 16 12 C -0.53 -29.92 8.44 25.60 0.22 -29.70 16 13 H 0.05 2.60 7.61 -2.91 -0.02 2.57 16 14 C 0.01 0.60 5.34 84.66 0.45 1.05 16 15 N -0.92 -54.29 11.83 21.45 0.25 -54.04 16 16 Si 0.95 44.74 29.54 68.60 2.03 46.76 16 17 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 19 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 20 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 21 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.06 2.18 5.13 -2.39 -0.01 2.17 16 24 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.04 1.79 5.26 -2.39 -0.01 1.78 16 26 H 0.06 1.83 8.13 -2.39 -0.02 1.81 16 27 H 0.09 3.26 5.80 -2.39 -0.01 3.25 16 28 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 29 H 0.02 1.07 8.04 -2.39 -0.02 1.05 16 30 H 0.03 1.90 6.70 -2.39 -0.02 1.88 16 31 H 0.04 1.82 4.22 -2.38 -0.01 1.81 16 32 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -59.92 246.87 5.99 -53.93 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 1.08 Total: 10.63 kcal Atomic # 6 Polarization: -59.91 SS G_CDS: 2.63 Total: -57.28 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: 0.25 Total: -54.04 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -59.92 5.99 -53.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260962284.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.989 kcal (2) G-P(sol) polarization free energy of solvation -59.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds