Wall clock time and date at job start Mon Mar 30 2020 02:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52998 * 109.47293 * 2 1 4 4 C 1.53001 * 109.47083 * 120.00237 * 2 1 3 5 5 H 1.09006 * 115.54795 * 274.32713 * 4 2 1 6 6 C 1.53000 * 117.51898 * 128.62756 * 4 2 1 7 7 C 1.52998 * 117.50127 * 59.99593 * 4 2 1 8 8 H 1.09003 * 117.49858 * 0.02562 * 7 4 2 9 9 C 1.53004 * 117.50151 * 215.00193 * 7 4 2 10 10 H 1.08992 * 109.47421 * 300.00400 * 9 7 4 11 11 C 1.53000 * 109.46978 * 180.02562 * 9 7 4 12 12 C 1.50695 * 109.46637 * 60.00353 * 9 7 4 13 13 H 1.08004 * 120.00546 * 0.27598 * 12 9 7 14 14 C 1.37885 * 119.99721 * 179.97438 * 12 9 7 15 15 N 1.31514 * 120.00035 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99853 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.47093 * 60.00328 * 16 14 12 18 18 H 1.48495 * 109.47002 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47239 * 300.00048 * 16 14 12 20 20 H 1.09005 * 109.47722 * 299.99935 * 1 2 3 21 21 H 1.08999 * 109.47283 * 60.00031 * 1 2 3 22 22 H 1.09004 * 109.47660 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47262 * 239.99489 * 2 1 3 24 24 H 1.09003 * 109.46989 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.47439 * 300.00086 * 3 2 1 26 26 H 1.09003 * 109.46931 * 60.00169 * 3 2 1 27 27 H 1.09007 * 117.49580 * 145.02808 * 6 4 2 28 28 H 1.08997 * 117.50125 * 0.02562 * 6 4 2 29 29 H 1.09005 * 109.47057 * 300.00061 * 11 9 7 30 30 H 1.08996 * 109.47481 * 59.99930 * 11 9 7 31 31 H 1.08996 * 109.46841 * 180.02562 * 11 9 7 32 32 H 0.97000 * 119.99706 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 2.1266 -0.1060 2.1448 6 6 3.0741 -1.8314 1.0518 7 6 1.6356 -2.1852 1.4343 8 1 1.0066 -2.6347 0.6658 9 6 1.3840 -2.6736 2.8623 10 1 2.2905 -2.5482 3.4542 11 6 0.9944 -4.1529 2.8341 12 6 0.2669 -1.8711 3.4780 13 1 -0.2184 -1.0938 2.9064 14 6 -0.1398 -2.1334 4.7691 15 7 0.4474 -3.0836 5.4634 16 14 -1.5241 -1.1382 5.5327 17 1 -2.7592 -1.3081 4.7259 18 1 -1.7684 -1.6122 6.9186 19 1 -1.1446 0.2973 5.5607 20 1 -0.3635 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 3.1300 1.4424 0.0005 25 1 1.6766 1.9563 -0.8899 26 1 1.6766 1.9563 0.8900 27 1 3.8413 -1.9464 1.8177 28 1 3.3918 -2.0478 0.0319 29 1 0.0879 -4.2788 2.2421 30 1 1.8026 -4.7331 2.3889 31 1 0.8148 -4.5007 3.8514 32 1 0.1615 -3.2678 6.3718 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260962285.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:07 Heat of formation + Delta-G solvation = -22.365994 kcal Electronic energy + Delta-G solvation = -11321.273347 eV Core-core repulsion = 9473.917619 eV Total energy + Delta-G solvation = -1847.355728 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.47096 -35.89616 -34.05697 -31.56589 -27.93495 -27.15699 -24.21375 -23.46892 -20.89529 -20.47261 -18.20644 -16.71242 -15.93740 -15.59864 -14.83093 -14.67910 -13.92778 -13.64260 -13.33389 -13.23434 -12.93769 -12.77424 -12.70331 -12.29717 -12.11428 -11.96613 -11.82527 -11.51482 -11.23995 -11.12787 -10.44983 -10.39459 -10.12094 -8.04063 -6.15865 1.41225 1.42281 1.49683 2.44768 3.16772 3.23318 3.85506 4.16652 4.21475 4.37380 4.58835 4.61880 4.79346 4.85951 4.90559 4.99512 5.00432 5.06768 5.12995 5.14662 5.28200 5.43785 5.45424 5.50342 5.55946 5.66624 5.70550 6.02159 6.16387 6.45581 6.95263 7.51142 9.00616 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.037698 B = 0.013661 C = 0.011115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.564514 B = 2049.212169 C = 2518.450160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.059 4.059 3 C -0.138 4.138 4 C -0.137 4.137 5 H 0.075 0.925 6 C -0.178 4.178 7 C -0.131 4.131 8 H 0.089 0.911 9 C 0.065 3.935 10 H -0.010 1.010 11 C -0.126 4.126 12 C -0.511 4.511 13 H 0.055 0.945 14 C 0.007 3.993 15 N -0.923 5.923 16 Si 0.948 3.052 17 H -0.271 1.271 18 H -0.287 1.287 19 H -0.273 1.273 20 H 0.039 0.961 21 H 0.070 0.930 22 H 0.043 0.957 23 H 0.076 0.924 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.044 0.956 27 H 0.076 0.924 28 H 0.107 0.893 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.053 0.947 32 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.557 5.473 -9.765 11.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.078 4.078 3 C -0.195 4.195 4 C -0.155 4.155 5 H 0.094 0.906 6 C -0.215 4.215 7 C -0.149 4.149 8 H 0.107 0.893 9 C 0.047 3.953 10 H 0.009 0.991 11 C -0.184 4.184 12 C -0.549 4.549 13 H 0.073 0.927 14 C -0.191 4.191 15 N -0.564 5.564 16 Si 0.775 3.225 17 H -0.196 1.196 18 H -0.212 1.212 19 H -0.198 1.198 20 H 0.058 0.942 21 H 0.089 0.911 22 H 0.062 0.938 23 H 0.094 0.906 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.063 0.937 27 H 0.094 0.906 28 H 0.125 0.875 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.547 5.396 -9.590 11.112 hybrid contribution -0.668 0.159 1.005 1.217 sum 0.879 5.555 -8.586 10.264 Atomic orbital electron populations 1.21765 0.95452 1.01294 1.01229 1.20673 0.95394 0.96406 0.95295 1.21766 1.01093 0.94902 1.01770 1.22277 1.03333 0.90946 0.98951 0.90647 1.23169 0.92295 1.04071 1.01946 1.22366 0.96648 0.97846 0.98067 0.89256 1.18248 0.94551 0.92769 0.89738 0.99149 1.21628 0.97654 0.98115 1.00987 1.21487 1.17872 1.17537 0.98053 0.92692 1.25747 0.99021 0.96363 0.97947 1.70026 1.43366 1.32445 1.10559 0.85756 0.80196 0.79213 0.77378 1.19615 1.21213 1.19823 0.94220 0.91130 0.93813 0.90551 0.92332 0.91140 0.93711 0.90578 0.87502 0.95439 0.95460 0.92831 0.93289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.22 9.03 71.98 0.65 -3.57 16 2 C -0.06 -1.74 3.07 -10.80 -0.03 -1.77 16 3 C -0.14 -3.43 9.18 71.98 0.66 -2.77 16 4 C -0.14 -5.06 4.40 -10.79 -0.05 -5.11 16 5 H 0.08 3.19 8.11 -2.38 -0.02 3.17 16 6 C -0.18 -6.27 9.82 30.60 0.30 -5.97 16 7 C -0.13 -5.49 4.30 -10.79 -0.05 -5.53 16 8 H 0.09 3.61 7.58 -2.39 -0.02 3.59 16 9 C 0.07 3.38 2.46 -11.54 -0.03 3.35 16 10 H -0.01 -0.55 7.90 -2.39 -0.02 -0.57 16 11 C -0.13 -6.34 8.95 71.98 0.64 -5.69 16 12 C -0.51 -28.53 8.25 25.60 0.21 -28.32 16 13 H 0.05 3.02 7.64 -2.91 -0.02 2.99 16 14 C 0.01 0.37 5.30 84.66 0.45 0.82 16 15 N -0.92 -54.88 11.32 21.45 0.24 -54.63 16 16 Si 0.95 44.61 29.54 68.60 2.03 46.64 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 18 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 19 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 20 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 21 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.04 1.42 7.29 -2.39 -0.02 1.41 16 23 H 0.08 2.01 7.90 -2.39 -0.02 1.99 16 24 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.08 2.79 8.05 -2.38 -0.02 2.78 16 28 H 0.11 3.11 8.05 -2.39 -0.02 3.09 16 29 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 2.98 6.07 -2.39 -0.01 2.97 16 32 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -59.99 260.83 6.08 -53.91 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 1.05 Total: 8.65 kcal Atomic # 6 Polarization: -57.32 SS G_CDS: 2.76 Total: -54.56 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.24 Total: -54.63 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -59.99 6.08 -53.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260962285.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.546 kcal (2) G-P(sol) polarization free energy of solvation -59.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds