Wall clock time and date at job start Mon Mar 30 2020 02:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.05541 * 2 1 4 4 C 1.54271 * 110.03014 * 238.58361 * 2 1 3 5 5 C 1.54888 * 104.19525 * 217.10702 * 4 2 1 6 6 C 1.54885 * 102.75040 * 37.94007 * 5 4 2 7 7 C 1.53002 * 110.48825 * 203.38088 * 6 5 4 8 8 C 1.53006 * 110.48374 * 80.73854 * 6 5 4 9 9 C 1.53870 * 110.03336 * 121.42009 * 2 1 3 10 10 H 1.09001 * 110.03540 * 359.97438 * 9 2 1 11 11 C 1.50708 * 110.03203 * 238.61583 * 9 2 1 12 12 H 1.07994 * 119.99473 * 245.40604 * 11 9 2 13 13 C 1.37873 * 119.99568 * 65.40190 * 11 9 2 14 14 N 1.31515 * 120.00616 * 0.02562 * 13 11 9 15 15 Si 1.86807 * 119.99619 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47016 * 90.00472 * 15 13 11 17 17 H 1.48498 * 109.47224 * 210.00348 * 15 13 11 18 18 H 1.48498 * 109.47043 * 330.00605 * 15 13 11 19 19 H 1.09005 * 109.46577 * 298.58270 * 1 2 3 20 20 H 1.08993 * 109.47027 * 58.58048 * 1 2 3 21 21 H 1.08999 * 109.47299 * 178.58531 * 1 2 3 22 22 H 1.09007 * 110.48535 * 335.78636 * 4 2 1 23 23 H 1.09002 * 110.48608 * 98.42313 * 4 2 1 24 24 H 1.09006 * 110.75491 * 279.62654 * 5 4 2 25 25 H 1.08995 * 110.91202 * 156.33108 * 5 4 2 26 26 H 1.08998 * 109.47245 * 165.74041 * 7 6 5 27 27 H 1.08997 * 109.46769 * 285.73715 * 7 6 5 28 28 H 1.09002 * 109.46965 * 45.73455 * 7 6 5 29 29 H 1.09001 * 109.46885 * 305.22495 * 8 6 5 30 30 H 1.08997 * 109.47429 * 65.22510 * 8 6 5 31 31 H 1.09000 * 109.46928 * 185.22859 * 8 6 5 32 32 H 0.97000 * 119.99848 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7555 -1.2369 5 6 3.3136 -1.5008 -0.7192 6 6 2.8875 -1.9407 0.7034 7 6 4.1175 -2.1696 1.5841 8 6 2.0308 -3.2067 0.6383 9 6 2.0571 -0.7536 1.2336 10 1 1.2230 -1.1190 1.8326 11 6 2.9267 0.1568 2.0621 12 1 3.9804 -0.0541 2.1699 13 6 2.3770 1.2587 2.6822 14 7 1.0938 1.5151 2.5512 15 14 3.4550 2.3875 3.7085 16 1 4.0111 3.4604 2.8453 17 1 2.6434 2.9956 4.7931 18 1 4.5676 1.6038 4.3027 19 1 -0.3633 0.4917 0.9025 20 1 -0.3633 0.5357 -0.8769 21 1 -0.3634 -1.0273 -0.0254 22 1 1.3141 -1.4660 -1.5967 23 1 2.3296 -0.0536 -2.0256 24 1 4.1710 -0.8291 -0.6752 25 1 3.5355 -2.3678 -1.3414 26 1 3.8109 -2.2279 2.6285 27 1 4.6026 -3.1019 1.2953 28 1 4.8152 -1.3420 1.4559 29 1 1.1855 -3.0395 -0.0293 30 1 2.6328 -4.0339 0.2621 31 1 1.6637 -3.4487 1.6357 32 1 0.7071 2.2902 2.9878 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260980654.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:37 Heat of formation + Delta-G solvation = -44.486346 kcal Electronic energy + Delta-G solvation = -11899.355224 eV Core-core repulsion = 10051.040285 eV Total energy + Delta-G solvation = -1848.314938 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.04164 -34.54498 -33.70042 -30.32753 -28.90977 -27.62468 -24.93646 -24.15876 -20.45750 -19.42470 -17.98604 -16.60372 -15.91836 -15.43130 -14.61468 -14.21665 -14.02748 -13.60979 -13.33551 -13.25836 -12.91644 -12.80616 -12.53694 -12.28953 -12.20605 -11.77046 -11.39757 -11.22230 -11.07540 -10.91116 -10.45210 -10.39221 -10.26743 -7.98616 -6.04944 1.40872 1.42887 1.51016 2.49163 3.30556 4.02458 4.17473 4.22005 4.57517 4.72612 4.75100 4.85472 4.93640 4.97925 5.03332 5.10986 5.15504 5.17097 5.28286 5.32519 5.40116 5.53963 5.61461 5.68617 5.76371 5.90634 6.00020 6.09348 6.19040 6.60215 7.07419 7.60350 9.08231 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.041222 B = 0.017377 C = 0.014347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.086544 B = 1610.905051 C = 1951.100987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.071 4.071 3 H 0.026 0.974 4 C -0.116 4.116 5 C -0.101 4.101 6 C -0.075 4.075 7 C -0.113 4.113 8 C -0.125 4.125 9 C 0.057 3.943 10 H -0.007 1.007 11 C -0.520 4.520 12 H 0.065 0.935 13 C 0.010 3.990 14 N -0.913 5.913 15 Si 0.939 3.061 16 H -0.281 1.281 17 H -0.290 1.290 18 H -0.270 1.270 19 H 0.046 0.954 20 H 0.038 0.962 21 H 0.041 0.959 22 H 0.067 0.933 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.075 0.925 26 H 0.035 0.965 27 H 0.054 0.946 28 H 0.043 0.957 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.038 0.962 32 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.614 -5.902 -5.236 8.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.090 4.090 3 H 0.045 0.955 4 C -0.154 4.154 5 C -0.138 4.138 6 C -0.075 4.075 7 C -0.170 4.170 8 C -0.182 4.182 9 C 0.039 3.961 10 H 0.011 0.989 11 C -0.558 4.558 12 H 0.083 0.917 13 C -0.188 4.188 14 N -0.553 5.553 15 Si 0.766 3.234 16 H -0.208 1.208 17 H -0.216 1.216 18 H -0.194 1.194 19 H 0.065 0.935 20 H 0.057 0.943 21 H 0.060 0.940 22 H 0.086 0.914 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.093 0.907 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.482 -5.777 -5.168 8.138 hybrid contribution 0.188 1.161 0.913 1.489 sum 2.669 -4.615 -4.255 6.821 Atomic orbital electron populations 1.21707 0.96740 0.99518 1.00310 1.21581 0.94275 0.97823 0.95310 0.95534 1.22450 0.97557 0.98546 0.96802 1.22427 0.96950 0.99037 0.95382 1.21449 0.95613 0.95326 0.95066 1.21651 0.97012 0.99584 0.98765 1.21732 0.99374 0.96531 1.00599 1.19348 0.93130 0.91507 0.92148 0.98895 1.21891 0.95930 1.08904 1.29069 0.91726 1.25677 0.95895 0.99305 0.97967 1.70071 1.12061 1.28137 1.45065 0.85851 0.79238 0.79545 0.78742 1.20767 1.21613 1.19424 0.93482 0.94333 0.93977 0.91437 0.92693 0.93079 0.90668 0.94624 0.92699 0.93757 0.93107 0.91531 0.94263 0.93793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.54 8.80 71.98 0.63 -4.91 16 2 C -0.07 -3.28 2.44 -10.07 -0.02 -3.30 16 3 H 0.03 1.41 7.43 -2.39 -0.02 1.39 16 4 C -0.12 -4.28 6.01 31.67 0.19 -4.09 16 5 C -0.10 -3.56 5.81 31.88 0.19 -3.37 16 6 C -0.07 -2.93 0.82 -51.11 -0.04 -2.97 16 7 C -0.11 -4.29 7.34 71.98 0.53 -3.76 16 8 C -0.13 -4.22 8.39 71.98 0.60 -3.62 16 9 C 0.06 2.81 1.91 -10.81 -0.02 2.79 16 10 H -0.01 -0.40 7.38 -2.39 -0.02 -0.41 16 11 C -0.52 -28.19 7.53 25.60 0.19 -28.00 16 12 H 0.06 3.42 5.19 -2.91 -0.02 3.41 16 13 C 0.01 0.53 5.15 84.65 0.44 0.97 16 14 N -0.91 -53.14 11.32 21.45 0.24 -52.90 16 15 Si 0.94 44.44 29.54 68.60 2.03 46.46 16 16 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 17 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 18 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 19 H 0.05 2.37 6.79 -2.38 -0.02 2.36 16 20 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 21 H 0.04 1.69 8.12 -2.39 -0.02 1.67 16 22 H 0.07 2.24 7.33 -2.38 -0.02 2.23 16 23 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.05 1.89 7.90 -2.38 -0.02 1.87 16 25 H 0.07 2.19 8.05 -2.39 -0.02 2.17 16 26 H 0.03 1.45 7.86 -2.39 -0.02 1.43 16 27 H 0.05 1.71 8.12 -2.39 -0.02 1.69 16 28 H 0.04 1.75 6.37 -2.39 -0.02 1.74 16 29 H 0.05 1.67 7.33 -2.39 -0.02 1.65 16 30 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -58.57 245.12 6.01 -52.56 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: 1.06 Total: 4.16 kcal Atomic # 6 Polarization: -52.97 SS G_CDS: 2.68 Total: -50.28 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.24 Total: -52.90 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -58.57 6.01 -52.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260980654.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.075 kcal (2) G-P(sol) polarization free energy of solvation -58.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds