Wall clock time and date at job start Mon Mar 30 2020 02:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.43136 * 2 1 4 4 C 1.54889 * 110.48454 * 122.53926 * 2 1 3 5 5 C 1.54898 * 102.74600 * 156.61938 * 4 2 1 6 6 C 1.54262 * 104.19390 * 322.06078 * 5 4 2 7 7 C 1.53002 * 110.03325 * 142.89778 * 6 5 4 8 8 C 1.53001 * 110.02971 * 264.27283 * 6 5 4 9 9 C 1.53868 * 106.64671 * 23.58298 * 6 5 4 10 10 H 1.08995 * 110.03499 * 240.74331 * 9 6 5 11 11 C 1.50692 * 110.03364 * 119.30781 * 9 6 5 12 12 H 1.08007 * 120.00431 * 294.78957 * 11 9 6 13 13 C 1.37881 * 120.00172 * 114.78682 * 11 9 6 14 14 N 1.31515 * 119.99486 * 6.35114 * 13 11 9 15 15 Si 1.86794 * 120.00284 * 186.35227 * 13 11 9 16 16 H 1.48500 * 109.47215 * 90.00230 * 15 13 11 17 17 H 1.48503 * 109.47376 * 209.99972 * 15 13 11 18 18 H 1.48500 * 109.47380 * 330.00134 * 15 13 11 19 19 H 1.09001 * 109.46927 * 294.83221 * 1 2 3 20 20 H 1.09000 * 109.47112 * 54.83561 * 1 2 3 21 21 H 1.08998 * 109.47165 * 174.83133 * 1 2 3 22 22 H 1.09004 * 110.75683 * 38.31087 * 4 2 1 23 23 H 1.08998 * 110.75846 * 274.93544 * 4 2 1 24 24 H 1.08992 * 110.48326 * 203.37690 * 5 4 2 25 25 H 1.09000 * 110.48378 * 80.73886 * 5 4 2 26 26 H 1.08997 * 109.47073 * 182.08689 * 7 6 5 27 27 H 1.08997 * 109.47062 * 62.08423 * 7 6 5 28 28 H 1.08999 * 109.46760 * 302.08677 * 7 6 5 29 29 H 1.09005 * 109.47480 * 297.91345 * 8 6 5 30 30 H 1.09003 * 109.47026 * 57.91272 * 8 6 5 31 31 H 1.08997 * 109.47386 * 177.90957 * 8 6 5 32 32 H 0.97005 * 119.99967 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0720 -0.7804 1.2232 5 6 3.4907 -1.1970 0.7615 6 6 3.3165 -1.5414 -0.7321 7 6 4.5465 -1.0885 -1.5213 8 6 3.1109 -3.0480 -0.9020 9 6 2.0697 -0.7813 -1.2172 10 1 1.3178 -1.4857 -1.5728 11 6 2.4445 0.1749 -2.3199 12 1 3.0986 1.0090 -2.1124 13 6 1.9526 -0.0149 -3.5939 14 7 1.0597 -0.9535 -3.8208 15 14 2.5543 1.0608 -4.9974 16 1 3.7413 0.4313 -5.6299 17 1 1.4750 1.2073 -6.0068 18 1 2.9252 2.3992 -4.4715 19 1 -0.3633 0.4316 0.9327 20 1 -0.3633 0.5919 -0.8401 21 1 -0.3633 -1.0235 -0.0926 22 1 1.4580 -1.6583 1.4243 23 1 2.1251 -0.1356 2.1003 24 1 3.8315 -2.0705 1.3172 25 1 4.1898 -0.3696 0.8832 26 1 4.3981 -1.3025 -2.5797 27 1 5.4258 -1.6233 -1.1623 28 1 4.6918 -0.0170 -1.3842 29 1 3.9939 -3.5778 -0.5445 30 1 2.2404 -3.3631 -0.3266 31 1 2.9519 -3.2765 -1.9558 32 1 0.7133 -1.0868 -4.7170 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260980655.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:39 Heat of formation + Delta-G solvation = -35.078240 kcal Electronic energy + Delta-G solvation = -11847.297130 eV Core-core repulsion = 9999.390157 eV Total energy + Delta-G solvation = -1847.906972 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.25814 -32.46745 -32.26521 -28.77686 -26.87572 -25.87993 -23.10135 -22.51533 -18.89942 -17.62062 -16.07179 -14.59076 -14.27592 -13.61583 -12.78024 -12.66317 -12.31504 -11.99542 -11.90010 -11.45208 -11.24279 -11.00995 -10.74761 -10.51482 -10.34745 -10.06163 -9.74075 -9.57234 -9.37324 -9.13763 -8.73048 -8.61779 -8.30281 -5.93181 -3.89811 3.33489 3.40976 3.43727 4.49861 5.32990 5.63466 5.73677 5.81429 6.21948 6.28795 6.29715 6.39605 6.49534 6.52616 6.62170 6.63171 6.75673 6.83003 6.87858 6.96520 6.98370 7.20994 7.27642 7.39734 7.54026 7.56292 7.80883 7.92821 8.09475 8.62215 9.18019 9.68433 11.16137 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.040792 B = 0.016942 C = 0.014547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.247858 B = 1652.312189 C = 1924.320101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.091 4.091 3 H 0.058 0.942 4 C -0.122 4.122 5 C -0.113 4.113 6 C -0.068 4.068 7 C -0.104 4.104 8 C -0.126 4.126 9 C 0.042 3.958 10 H 0.071 0.929 11 C -0.494 4.494 12 H 0.052 0.948 13 C 0.064 3.936 14 N -0.894 5.894 15 Si 0.880 3.120 16 H -0.281 1.281 17 H -0.289 1.289 18 H -0.275 1.275 19 H 0.028 0.972 20 H 0.053 0.947 21 H 0.044 0.956 22 H 0.054 0.946 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.013 0.987 28 H 0.048 0.952 29 H 0.030 0.970 30 H 0.041 0.959 31 H 0.054 0.946 32 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.323 -0.772 5.832 6.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.110 4.110 3 H 0.076 0.924 4 C -0.160 4.160 5 C -0.151 4.151 6 C -0.069 4.069 7 C -0.161 4.161 8 C -0.183 4.183 9 C 0.023 3.977 10 H 0.089 0.911 11 C -0.532 4.532 12 H 0.070 0.930 13 C -0.137 4.137 14 N -0.533 5.533 15 Si 0.708 3.292 16 H -0.208 1.208 17 H -0.215 1.215 18 H -0.200 1.200 19 H 0.047 0.953 20 H 0.072 0.928 21 H 0.063 0.937 22 H 0.073 0.927 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.032 0.968 28 H 0.067 0.933 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.209 -0.850 5.669 6.143 hybrid contribution 0.317 0.575 -0.872 1.092 sum 2.526 -0.275 4.797 5.428 Atomic orbital electron populations 1.21623 0.96748 1.00751 0.99316 1.22171 0.94168 0.99071 0.95583 0.92389 1.22560 0.96654 0.99145 0.97606 1.22443 0.96477 0.99136 0.97009 1.21398 0.98612 0.94369 0.92515 1.21614 0.94385 0.99675 1.00471 1.21805 0.98923 0.96302 1.01318 1.19707 0.92347 0.94610 0.91024 0.91095 1.21090 1.27950 1.10856 0.93322 0.93025 1.24938 0.94765 0.95279 0.98721 1.69913 1.29065 1.33253 1.21107 0.86784 0.78509 0.81139 0.82726 1.20756 1.21469 1.20014 0.95275 0.92763 0.93736 0.92742 0.93757 0.93714 0.92809 0.92443 0.96797 0.93280 0.95055 0.94027 0.92718 0.93182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 9.17 37.16 0.34 -2.24 16 2 C -0.09 -1.96 2.98 -88.90 -0.26 -2.23 16 3 H 0.06 1.29 7.86 -51.93 -0.41 0.89 16 4 C -0.12 -2.27 6.33 -24.73 -0.16 -2.42 16 5 C -0.11 -2.12 5.90 -25.07 -0.15 -2.27 16 6 C -0.07 -1.46 0.94 -153.39 -0.14 -1.61 16 7 C -0.10 -2.23 7.20 37.16 0.27 -1.96 16 8 C -0.13 -2.54 8.14 37.16 0.30 -2.24 16 9 C 0.04 1.01 2.41 -90.60 -0.22 0.80 16 10 H 0.07 1.94 6.12 -51.93 -0.32 1.62 16 11 C -0.49 -13.18 5.85 -34.44 -0.20 -13.39 16 12 H 0.05 1.39 7.06 -52.48 -0.37 1.02 16 13 C 0.06 1.75 5.45 -17.82 -0.10 1.66 16 14 N -0.89 -25.71 12.65 55.43 0.70 -25.01 16 15 Si 0.88 21.33 29.54 -169.99 -5.02 16.30 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 20 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 21 H 0.04 0.90 8.02 -51.93 -0.42 0.48 16 22 H 0.05 0.98 8.06 -51.93 -0.42 0.56 16 23 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.04 0.76 7.84 -51.93 -0.41 0.35 16 25 H 0.05 0.99 7.84 -51.93 -0.41 0.58 16 26 H 0.06 1.34 7.54 -51.93 -0.39 0.95 16 27 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.05 1.06 7.01 -51.93 -0.36 0.69 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 250.54 15.07 3.78 3.78 Total: -1.00 -27.36 250.54 -6.46 -33.82 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -5.60 Total: -2.99 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: -0.32 Total: -25.90 kcal Atomic # 7 Polarization: -25.71 SS G_CDS: 0.70 Total: -25.01 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -27.36 -6.46 -33.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260980655.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.258 kcal (2) G-P(sol) polarization free energy of solvation -27.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds