Wall clock time and date at job start Mon Mar 30 2020 02:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.43136 * 2 1 4 4 C 1.54889 * 110.48454 * 122.53926 * 2 1 3 5 5 C 1.54898 * 102.74600 * 156.61938 * 4 2 1 6 6 C 1.54262 * 104.19390 * 322.06078 * 5 4 2 7 7 C 1.53002 * 110.03325 * 142.89778 * 6 5 4 8 8 C 1.53001 * 110.02971 * 264.27283 * 6 5 4 9 9 C 1.53868 * 106.64671 * 23.58298 * 6 5 4 10 10 H 1.08995 * 110.03499 * 240.74331 * 9 6 5 11 11 C 1.50692 * 110.03364 * 119.30781 * 9 6 5 12 12 H 1.08007 * 120.00431 * 294.78957 * 11 9 6 13 13 C 1.37881 * 120.00172 * 114.78682 * 11 9 6 14 14 N 1.31515 * 119.99486 * 6.35114 * 13 11 9 15 15 Si 1.86794 * 120.00284 * 186.35227 * 13 11 9 16 16 H 1.48500 * 109.47215 * 90.00230 * 15 13 11 17 17 H 1.48503 * 109.47376 * 209.99972 * 15 13 11 18 18 H 1.48500 * 109.47380 * 330.00134 * 15 13 11 19 19 H 1.09001 * 109.46927 * 294.83221 * 1 2 3 20 20 H 1.09000 * 109.47112 * 54.83561 * 1 2 3 21 21 H 1.08998 * 109.47165 * 174.83133 * 1 2 3 22 22 H 1.09004 * 110.75683 * 38.31087 * 4 2 1 23 23 H 1.08998 * 110.75846 * 274.93544 * 4 2 1 24 24 H 1.08992 * 110.48326 * 203.37690 * 5 4 2 25 25 H 1.09000 * 110.48378 * 80.73886 * 5 4 2 26 26 H 1.08997 * 109.47073 * 182.08689 * 7 6 5 27 27 H 1.08997 * 109.47062 * 62.08423 * 7 6 5 28 28 H 1.08999 * 109.46760 * 302.08677 * 7 6 5 29 29 H 1.09005 * 109.47480 * 297.91345 * 8 6 5 30 30 H 1.09003 * 109.47026 * 57.91272 * 8 6 5 31 31 H 1.08997 * 109.47386 * 177.90957 * 8 6 5 32 32 H 0.97005 * 119.99967 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0720 -0.7804 1.2232 5 6 3.4907 -1.1970 0.7615 6 6 3.3165 -1.5414 -0.7321 7 6 4.5465 -1.0885 -1.5213 8 6 3.1109 -3.0480 -0.9020 9 6 2.0697 -0.7813 -1.2172 10 1 1.3178 -1.4857 -1.5728 11 6 2.4445 0.1749 -2.3199 12 1 3.0986 1.0090 -2.1124 13 6 1.9526 -0.0149 -3.5939 14 7 1.0597 -0.9535 -3.8208 15 14 2.5543 1.0608 -4.9974 16 1 3.7413 0.4313 -5.6299 17 1 1.4750 1.2073 -6.0068 18 1 2.9252 2.3992 -4.4715 19 1 -0.3633 0.4316 0.9327 20 1 -0.3633 0.5919 -0.8401 21 1 -0.3633 -1.0235 -0.0926 22 1 1.4580 -1.6583 1.4243 23 1 2.1251 -0.1356 2.1003 24 1 3.8315 -2.0705 1.3172 25 1 4.1898 -0.3696 0.8832 26 1 4.3981 -1.3025 -2.5797 27 1 5.4258 -1.6233 -1.1623 28 1 4.6918 -0.0170 -1.3842 29 1 3.9939 -3.5778 -0.5445 30 1 2.2404 -3.3631 -0.3266 31 1 2.9519 -3.2765 -1.9558 32 1 0.7133 -1.0868 -4.7170 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260980655.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:39 Heat of formation + Delta-G solvation = -49.046078 kcal Electronic energy + Delta-G solvation = -11847.902821 eV Core-core repulsion = 9999.390157 eV Total energy + Delta-G solvation = -1848.512663 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.95161 -34.51097 -33.93411 -30.47623 -28.65530 -27.63662 -25.05600 -24.07997 -20.55904 -19.43839 -18.06403 -16.54795 -15.92987 -15.31255 -14.47818 -14.41994 -14.03363 -13.71318 -13.60129 -13.20910 -12.93622 -12.85874 -12.53644 -12.35200 -12.07484 -11.90331 -11.34700 -11.15012 -11.03960 -10.92826 -10.58140 -10.56806 -10.31353 -8.03721 -6.03988 1.38602 1.40899 1.48839 2.46746 3.25269 4.02620 4.19408 4.20186 4.57266 4.67541 4.69702 4.82716 4.88232 4.99661 5.02898 5.06610 5.19359 5.21056 5.24706 5.29721 5.33891 5.50154 5.61176 5.67442 5.77020 5.81904 5.88427 6.05478 6.12242 6.60608 7.10978 7.55755 9.05356 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.040792 B = 0.016942 C = 0.014547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.247858 B = 1652.312189 C = 1924.320101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.095 4.095 3 H 0.047 0.953 4 C -0.112 4.112 5 C -0.106 4.106 6 C -0.076 4.076 7 C -0.099 4.099 8 C -0.120 4.120 9 C 0.033 3.967 10 H 0.034 0.966 11 C -0.494 4.494 12 H 0.045 0.955 13 C 0.013 3.987 14 N -0.928 5.928 15 Si 0.934 3.066 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.269 1.269 19 H 0.061 0.939 20 H 0.026 0.974 21 H 0.038 0.962 22 H 0.061 0.939 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.025 0.975 27 H 0.043 0.957 28 H 0.041 0.959 29 H 0.059 0.941 30 H 0.046 0.954 31 H 0.024 0.976 32 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.312 -0.676 7.554 8.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.114 4.114 3 H 0.065 0.935 4 C -0.150 4.150 5 C -0.144 4.144 6 C -0.076 4.076 7 C -0.156 4.156 8 C -0.177 4.177 9 C 0.015 3.985 10 H 0.052 0.948 11 C -0.532 4.532 12 H 0.063 0.937 13 C -0.184 4.184 14 N -0.569 5.569 15 Si 0.761 3.239 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.194 1.194 19 H 0.080 0.920 20 H 0.046 0.954 21 H 0.058 0.942 22 H 0.080 0.920 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.045 0.955 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.209 -0.744 7.398 8.098 hybrid contribution 0.013 0.551 -1.386 1.492 sum 3.222 -0.193 6.012 6.824 Atomic orbital electron populations 1.21554 0.96213 1.00201 0.99884 1.22112 0.94739 0.98469 0.96084 0.93489 1.22501 0.96270 0.99356 0.96849 1.22391 0.96826 1.00464 0.94676 1.21394 0.96911 0.94656 0.94668 1.21520 0.95767 0.99583 0.98710 1.21725 1.00489 0.95866 0.99643 1.19710 0.93050 0.94061 0.91709 0.94751 1.21371 1.26865 1.10728 0.94274 0.93666 1.25581 0.95218 0.96628 1.00972 1.70043 1.30562 1.35044 1.21260 0.85920 0.77952 0.79863 0.80173 1.20400 1.21514 1.19386 0.91984 0.95436 0.94245 0.91982 0.91075 0.91094 0.92217 0.95531 0.93829 0.94040 0.92161 0.93499 0.95683 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.84 9.17 71.98 0.66 -4.18 16 2 C -0.10 -3.98 2.98 -9.68 -0.03 -4.01 16 3 H 0.05 2.05 7.86 -2.39 -0.02 2.03 16 4 C -0.11 -3.78 6.33 31.89 0.20 -3.58 16 5 C -0.11 -3.59 5.90 31.67 0.19 -3.40 16 6 C -0.08 -3.13 0.94 -51.46 -0.05 -3.18 16 7 C -0.10 -4.10 7.20 71.98 0.52 -3.58 16 8 C -0.12 -4.66 8.14 71.98 0.59 -4.07 16 9 C 0.03 1.63 2.41 -10.78 -0.03 1.61 16 10 H 0.03 1.92 6.12 -2.39 -0.01 1.90 16 11 C -0.49 -26.75 5.85 25.60 0.15 -26.60 16 12 H 0.05 2.45 7.06 -2.91 -0.02 2.43 16 13 C 0.01 0.73 5.45 84.66 0.46 1.20 16 14 N -0.93 -55.05 12.65 21.45 0.27 -54.78 16 15 Si 0.93 44.49 29.54 68.60 2.03 46.52 16 16 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 17 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 18 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 19 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 20 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 21 H 0.04 1.58 8.02 -2.39 -0.02 1.56 16 22 H 0.06 2.01 8.06 -2.38 -0.02 1.99 16 23 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.07 2.06 7.84 -2.39 -0.02 2.05 16 25 H 0.06 1.96 7.84 -2.39 -0.02 1.94 16 26 H 0.03 1.22 7.54 -2.39 -0.02 1.20 16 27 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.04 1.74 7.01 -2.39 -0.02 1.72 16 29 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.26 14.60 8.31 -92.70 -0.77 13.83 16 Total: -1.00 -59.01 250.54 6.01 -53.00 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: 1.05 Total: 5.06 kcal Atomic # 6 Polarization: -52.46 SS G_CDS: 2.66 Total: -49.80 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: 0.27 Total: -54.78 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -59.01 6.01 -53.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260980655.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.951 kcal (2) G-P(sol) polarization free energy of solvation -59.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds