Wall clock time and date at job start Mon Mar 30 2020 02:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 110.42999 * 2 1 4 4 C 1.54878 * 110.60169 * 122.61991 * 2 1 3 5 5 C 1.54885 * 102.75230 * 156.67785 * 4 2 1 6 6 C 1.54267 * 104.19252 * 322.05874 * 5 4 2 7 7 C 1.53007 * 110.03364 * 264.32204 * 6 5 4 8 8 C 1.53007 * 110.07281 * 142.91767 * 6 5 4 9 9 C 1.53875 * 106.60000 * 23.60841 * 6 5 4 10 10 H 1.09005 * 110.07141 * 119.30827 * 9 6 5 11 11 C 1.50703 * 110.03143 * 240.71426 * 9 6 5 12 12 H 1.08000 * 119.99885 * 62.40633 * 11 9 6 13 13 C 1.37873 * 120.00037 * 242.40123 * 11 9 6 14 14 N 1.31511 * 120.00015 * 5.63397 * 13 11 9 15 15 Si 1.86798 * 119.99938 * 185.63480 * 13 11 9 16 16 H 1.48495 * 109.47312 * 60.00024 * 15 13 11 17 17 H 1.48501 * 109.47342 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47020 * 300.00038 * 15 13 11 19 19 H 1.09002 * 109.47414 * 188.80284 * 1 2 3 20 20 H 1.08998 * 109.47438 * 308.80512 * 1 2 3 21 21 H 1.08999 * 109.47534 * 68.80475 * 1 2 3 22 22 H 1.09005 * 110.76208 * 274.99501 * 4 2 1 23 23 H 1.09003 * 110.75745 * 38.36269 * 4 2 1 24 24 H 1.08997 * 110.49015 * 203.37968 * 5 4 2 25 25 H 1.08999 * 110.60230 * 80.79189 * 5 4 2 26 26 H 1.08997 * 109.47168 * 177.16454 * 7 6 5 27 27 H 1.09000 * 109.46991 * 297.16942 * 7 6 5 28 28 H 1.09002 * 109.46649 * 57.16817 * 7 6 5 29 29 H 1.08996 * 109.46685 * 302.80504 * 8 6 5 30 30 H 1.08994 * 109.46927 * 62.80648 * 8 6 5 31 31 H 1.09003 * 109.47039 * 182.80685 * 8 6 5 32 32 H 0.97000 * 119.99915 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0749 -0.7815 1.2211 5 6 3.4937 -1.1946 0.7571 6 6 3.3184 -1.5368 -0.7369 7 6 3.1143 -3.0434 -0.9091 8 6 4.5465 -1.0810 -1.5276 9 6 2.0698 -0.7772 -1.2183 10 1 2.3381 -0.0833 -2.0150 11 6 1.0309 -1.7514 -1.7109 12 1 0.6032 -2.4740 -1.0317 13 6 0.6265 -1.7202 -3.0286 14 7 1.2246 -0.9172 -3.8812 15 14 -0.7711 -2.8186 -3.6029 16 1 -2.0032 -2.4909 -2.8416 17 1 -1.0105 -2.5983 -5.0518 18 1 -0.4100 -4.2405 -3.3719 19 1 -0.3634 -1.0156 0.1573 20 1 -0.3634 0.6440 0.8008 21 1 -0.3634 0.3715 -0.9581 22 1 2.1278 -0.1381 2.0994 23 1 1.4628 -1.6608 1.4215 24 1 3.8369 -2.0685 1.3109 25 1 4.1933 -0.3677 0.8795 26 1 2.9413 -3.2686 -1.9615 27 1 4.0034 -3.5721 -0.5657 28 1 2.2525 -3.3625 -0.3229 29 1 4.6980 -0.0119 -1.3790 30 1 5.4249 -1.6244 -1.1795 31 1 4.3913 -1.2821 -2.5876 32 1 0.9402 -0.8955 -4.8083 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260980656.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:41 Heat of formation + Delta-G solvation = -32.166025 kcal Electronic energy + Delta-G solvation = -11925.699849 eV Core-core repulsion = 10077.919160 eV Total energy + Delta-G solvation = -1847.780689 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.32091 -32.49752 -32.16596 -28.76815 -26.61370 -25.79072 -23.44913 -22.43565 -18.83290 -17.58793 -15.89932 -14.59933 -14.32863 -13.62863 -12.79072 -12.55599 -12.29843 -12.15507 -11.68448 -11.40541 -11.15823 -10.80521 -10.72008 -10.48062 -10.38339 -10.17478 -9.67283 -9.56489 -9.36966 -9.05639 -8.72245 -8.49959 -8.29723 -5.91541 -3.87088 3.35203 3.40649 3.43294 4.50639 5.35874 5.65661 5.75999 5.82660 6.22343 6.33307 6.38727 6.47361 6.53067 6.55173 6.64846 6.72766 6.78471 6.89138 6.92959 6.99083 7.09062 7.19710 7.38941 7.50011 7.54530 7.59306 7.84094 7.91625 8.07488 8.63117 9.18044 9.69662 11.18091 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.040700 B = 0.017798 C = 0.015212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.788734 B = 1572.842692 C = 1840.261074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.094 4.094 3 H 0.041 0.959 4 C -0.113 4.113 5 C -0.115 4.115 6 C -0.066 4.066 7 C -0.102 4.102 8 C -0.128 4.128 9 C 0.040 3.960 10 H 0.066 0.934 11 C -0.484 4.484 12 H 0.052 0.948 13 C 0.062 3.938 14 N -0.897 5.897 15 Si 0.879 3.121 16 H -0.278 1.278 17 H -0.290 1.290 18 H -0.279 1.279 19 H 0.053 0.947 20 H 0.015 0.985 21 H 0.052 0.948 22 H 0.040 0.960 23 H 0.059 0.941 24 H 0.046 0.954 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.012 0.988 28 H 0.047 0.953 29 H 0.040 0.960 30 H 0.030 0.970 31 H 0.056 0.944 32 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.229 -0.331 5.797 6.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.113 4.113 3 H 0.060 0.940 4 C -0.151 4.151 5 C -0.153 4.153 6 C -0.066 4.066 7 C -0.160 4.160 8 C -0.185 4.185 9 C 0.022 3.978 10 H 0.084 0.916 11 C -0.522 4.522 12 H 0.070 0.930 13 C -0.139 4.139 14 N -0.536 5.536 15 Si 0.707 3.293 16 H -0.204 1.204 17 H -0.216 1.216 18 H -0.204 1.204 19 H 0.072 0.928 20 H 0.034 0.966 21 H 0.072 0.928 22 H 0.059 0.941 23 H 0.077 0.923 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.031 0.969 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.221 -0.281 5.584 6.015 hybrid contribution -0.775 -0.608 -0.408 1.066 sum 1.446 -0.889 5.176 5.447 Atomic orbital electron populations 1.21504 0.95886 1.00291 0.99181 1.22094 0.95336 0.97139 0.96702 0.94026 1.22472 0.96362 0.99219 0.97035 1.22465 0.96492 0.99039 0.97291 1.21371 0.96744 0.96363 0.92132 1.21594 0.97608 0.94691 1.02067 1.21818 0.96654 0.99159 1.00868 1.19670 0.90809 0.94637 0.92732 0.91564 1.20905 1.20923 1.16286 0.94078 0.92951 1.24912 0.96330 0.95555 0.97071 1.69899 1.41162 1.38892 1.03644 0.86865 0.83536 0.81311 0.77558 1.20364 1.21559 1.20422 0.92779 0.96613 0.92845 0.94085 0.92263 0.93548 0.93230 0.92220 0.96870 0.93399 0.94133 0.95122 0.92488 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.35 8.19 37.16 0.30 -2.05 16 2 C -0.09 -2.01 3.36 -88.97 -0.30 -2.31 16 3 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.11 -2.15 6.33 -24.75 -0.16 -2.31 16 5 C -0.12 -2.16 5.90 -25.07 -0.15 -2.31 16 6 C -0.07 -1.40 0.94 -153.38 -0.14 -1.54 16 7 C -0.10 -2.18 7.19 37.16 0.27 -1.92 16 8 C -0.13 -2.58 8.16 37.16 0.30 -2.27 16 9 C 0.04 0.97 2.76 -90.65 -0.25 0.72 16 10 H 0.07 1.82 6.53 -51.93 -0.34 1.48 16 11 C -0.48 -12.57 4.03 -34.44 -0.14 -12.71 16 12 H 0.05 1.37 6.47 -52.49 -0.34 1.03 16 13 C 0.06 1.68 5.45 -17.82 -0.10 1.58 16 14 N -0.90 -25.67 12.65 55.43 0.70 -24.97 16 15 Si 0.88 21.19 29.54 -169.99 -5.02 16.17 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H 0.05 1.16 6.91 -51.93 -0.36 0.80 16 20 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 21 H 0.05 1.22 7.98 -51.93 -0.41 0.81 16 22 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 24 H 0.05 0.81 7.84 -51.93 -0.41 0.40 16 25 H 0.05 0.87 7.84 -51.93 -0.41 0.47 16 26 H 0.06 1.40 7.51 -51.93 -0.39 1.01 16 27 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.05 1.03 7.00 -51.93 -0.36 0.66 16 29 H 0.04 0.78 8.12 -51.93 -0.42 0.36 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 247.14 15.07 3.72 3.72 Total: -1.00 -26.95 247.14 -6.48 -33.43 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -5.52 Total: -3.23 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: -0.36 Total: -25.11 kcal Atomic # 7 Polarization: -25.67 SS G_CDS: 0.70 Total: -24.97 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -26.95 -6.48 -33.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260980656.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.261 kcal (2) G-P(sol) polarization free energy of solvation -26.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds