Wall clock time and date at job start Mon Mar 30 2020 02:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 110.42999 * 2 1 4 4 C 1.54878 * 110.60169 * 122.61991 * 2 1 3 5 5 C 1.54885 * 102.75230 * 156.67785 * 4 2 1 6 6 C 1.54267 * 104.19252 * 322.05874 * 5 4 2 7 7 C 1.53007 * 110.03364 * 264.32204 * 6 5 4 8 8 C 1.53007 * 110.07281 * 142.91767 * 6 5 4 9 9 C 1.53875 * 106.60000 * 23.60841 * 6 5 4 10 10 H 1.09005 * 110.07141 * 119.30827 * 9 6 5 11 11 C 1.50703 * 110.03143 * 240.71426 * 9 6 5 12 12 H 1.08000 * 119.99885 * 62.40633 * 11 9 6 13 13 C 1.37873 * 120.00037 * 242.40123 * 11 9 6 14 14 N 1.31511 * 120.00015 * 5.63397 * 13 11 9 15 15 Si 1.86798 * 119.99938 * 185.63480 * 13 11 9 16 16 H 1.48495 * 109.47312 * 60.00024 * 15 13 11 17 17 H 1.48501 * 109.47342 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47020 * 300.00038 * 15 13 11 19 19 H 1.09002 * 109.47414 * 188.80284 * 1 2 3 20 20 H 1.08998 * 109.47438 * 308.80512 * 1 2 3 21 21 H 1.08999 * 109.47534 * 68.80475 * 1 2 3 22 22 H 1.09005 * 110.76208 * 274.99501 * 4 2 1 23 23 H 1.09003 * 110.75745 * 38.36269 * 4 2 1 24 24 H 1.08997 * 110.49015 * 203.37968 * 5 4 2 25 25 H 1.08999 * 110.60230 * 80.79189 * 5 4 2 26 26 H 1.08997 * 109.47168 * 177.16454 * 7 6 5 27 27 H 1.09000 * 109.46991 * 297.16942 * 7 6 5 28 28 H 1.09002 * 109.46649 * 57.16817 * 7 6 5 29 29 H 1.08996 * 109.46685 * 302.80504 * 8 6 5 30 30 H 1.08994 * 109.46927 * 62.80648 * 8 6 5 31 31 H 1.09003 * 109.47039 * 182.80685 * 8 6 5 32 32 H 0.97000 * 119.99915 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0749 -0.7815 1.2211 5 6 3.4937 -1.1946 0.7571 6 6 3.3184 -1.5368 -0.7369 7 6 3.1143 -3.0434 -0.9091 8 6 4.5465 -1.0810 -1.5276 9 6 2.0698 -0.7772 -1.2183 10 1 2.3381 -0.0833 -2.0150 11 6 1.0309 -1.7514 -1.7109 12 1 0.6032 -2.4740 -1.0317 13 6 0.6265 -1.7202 -3.0286 14 7 1.2246 -0.9172 -3.8812 15 14 -0.7711 -2.8186 -3.6029 16 1 -2.0032 -2.4909 -2.8416 17 1 -1.0105 -2.5983 -5.0518 18 1 -0.4100 -4.2405 -3.3719 19 1 -0.3634 -1.0156 0.1573 20 1 -0.3634 0.6440 0.8008 21 1 -0.3634 0.3715 -0.9581 22 1 2.1278 -0.1381 2.0994 23 1 1.4628 -1.6608 1.4215 24 1 3.8369 -2.0685 1.3109 25 1 4.1933 -0.3677 0.8795 26 1 2.9413 -3.2686 -1.9615 27 1 4.0034 -3.5721 -0.5657 28 1 2.2525 -3.3625 -0.3229 29 1 4.6980 -0.0119 -1.3790 30 1 5.4249 -1.6244 -1.1795 31 1 4.3913 -1.2821 -2.5876 32 1 0.9402 -0.8955 -4.8083 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260980656.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:40 Heat of formation + Delta-G solvation = -45.832008 kcal Electronic energy + Delta-G solvation = -11926.292451 eV Core-core repulsion = 10077.919160 eV Total energy + Delta-G solvation = -1848.373291 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.02648 -34.47794 -33.88940 -30.47374 -28.37363 -27.59567 -25.37137 -24.02228 -20.55393 -19.35627 -17.88782 -16.49521 -16.05375 -15.32764 -14.45603 -14.37366 -14.04686 -13.83508 -13.41421 -13.17841 -12.91611 -12.66662 -12.51516 -12.28416 -12.07528 -12.05953 -11.29889 -11.13911 -11.00406 -10.85876 -10.57593 -10.45279 -10.29274 -7.99981 -5.98405 1.41385 1.42612 1.48473 2.49070 3.30087 4.03068 4.20844 4.21546 4.58216 4.71195 4.73241 4.87627 4.93525 5.01070 5.06092 5.10694 5.22135 5.23494 5.26114 5.29640 5.42701 5.50681 5.69910 5.73003 5.79598 5.83504 5.88289 6.07953 6.11621 6.62087 7.13174 7.59707 9.09684 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.040700 B = 0.017798 C = 0.015212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.788734 B = 1572.842692 C = 1840.261074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.098 4.098 3 H 0.044 0.956 4 C -0.105 4.105 5 C -0.107 4.107 6 C -0.073 4.073 7 C -0.096 4.096 8 C -0.122 4.122 9 C 0.031 3.969 10 H 0.024 0.976 11 C -0.471 4.471 12 H 0.050 0.950 13 C 0.009 3.991 14 N -0.933 5.933 15 Si 0.931 3.069 16 H -0.272 1.272 17 H -0.293 1.293 18 H -0.273 1.273 19 H 0.045 0.955 20 H 0.046 0.954 21 H 0.023 0.977 22 H 0.070 0.930 23 H 0.056 0.944 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.026 0.974 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.025 0.975 32 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.624 -0.792 7.940 8.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.117 4.117 3 H 0.063 0.937 4 C -0.143 4.143 5 C -0.145 4.145 6 C -0.073 4.073 7 C -0.153 4.153 8 C -0.179 4.179 9 C 0.012 3.988 10 H 0.042 0.958 11 C -0.510 4.510 12 H 0.068 0.932 13 C -0.187 4.187 14 N -0.575 5.575 15 Si 0.758 3.242 16 H -0.198 1.198 17 H -0.219 1.219 18 H -0.199 1.199 19 H 0.064 0.936 20 H 0.065 0.935 21 H 0.042 0.958 22 H 0.089 0.911 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.045 0.955 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.609 -0.754 7.745 8.207 hybrid contribution -0.878 -0.443 -1.048 1.437 sum 1.731 -1.197 6.697 7.020 Atomic orbital electron populations 1.21415 0.95849 1.00297 0.98714 1.22077 0.95458 0.97347 0.96826 0.93727 1.22412 0.96097 0.99120 0.96629 1.22408 0.96784 1.00508 0.94777 1.21364 0.95608 0.95824 0.94510 1.21493 0.98749 0.95172 0.99894 1.21738 0.97400 0.99902 0.98865 1.19686 0.92068 0.94143 0.92925 0.95774 1.21114 1.20436 1.15704 0.93709 0.93176 1.25550 0.98544 0.97063 0.97588 1.70043 1.42857 1.40973 1.03630 0.86023 0.81315 0.80001 0.76863 1.19757 1.21940 1.19852 0.93554 0.93494 0.95785 0.91142 0.92566 0.91449 0.91703 0.95500 0.93971 0.93881 0.93655 0.92296 0.95602 0.93701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.33 8.19 71.98 0.59 -3.74 16 2 C -0.10 -4.06 3.36 -9.72 -0.03 -4.10 16 3 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 4 C -0.11 -3.61 6.33 31.88 0.20 -3.40 16 5 C -0.11 -3.61 5.90 31.67 0.19 -3.42 16 6 C -0.07 -2.99 0.94 -51.45 -0.05 -3.04 16 7 C -0.10 -3.95 7.19 71.98 0.52 -3.43 16 8 C -0.12 -4.78 8.16 71.98 0.59 -4.19 16 9 C 0.03 1.48 2.76 -10.82 -0.03 1.45 16 10 H 0.02 1.35 6.53 -2.38 -0.02 1.34 16 11 C -0.47 -24.70 4.03 25.60 0.10 -24.60 16 12 H 0.05 2.61 6.47 -2.91 -0.02 2.59 16 13 C 0.01 0.49 5.45 84.65 0.46 0.95 16 14 N -0.93 -55.38 12.65 21.45 0.27 -55.11 16 15 Si 0.93 44.13 29.54 68.60 2.03 46.16 16 16 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 17 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 18 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 19 H 0.05 1.93 6.91 -2.39 -0.02 1.91 16 20 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 21 H 0.02 1.08 7.98 -2.39 -0.02 1.06 16 22 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 23 H 0.06 1.97 7.96 -2.39 -0.02 1.95 16 24 H 0.07 2.02 7.84 -2.39 -0.02 2.00 16 25 H 0.06 2.00 7.84 -2.39 -0.02 1.98 16 26 H 0.03 1.24 7.51 -2.39 -0.02 1.22 16 27 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.04 1.77 7.00 -2.39 -0.02 1.76 16 29 H 0.04 1.69 8.12 -2.39 -0.02 1.67 16 30 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -58.15 247.14 5.89 -52.27 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: 1.05 Total: 4.20 kcal Atomic # 6 Polarization: -50.05 SS G_CDS: 2.54 Total: -47.51 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.27 Total: -55.11 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -58.15 5.89 -52.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260980656.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.434 kcal (2) G-P(sol) polarization free energy of solvation -58.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds