Wall clock time and date at job start Mon Mar 30 2020 02:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.43786 * 2 1 4 4 C 1.54886 * 110.48633 * 237.31446 * 2 1 3 5 5 C 1.54893 * 102.75119 * 203.38069 * 4 2 1 6 6 C 1.54261 * 104.19448 * 37.94251 * 5 4 2 7 7 C 1.52998 * 110.03262 * 217.10751 * 6 5 4 8 8 C 1.53005 * 110.03253 * 95.67213 * 6 5 4 9 9 C 1.53874 * 106.60152 * 336.39209 * 6 5 4 10 10 H 1.08999 * 110.07266 * 240.69356 * 9 6 5 11 11 C 1.50697 * 110.03693 * 119.28210 * 9 6 5 12 12 H 1.08004 * 120.00121 * 299.21244 * 11 9 6 13 13 C 1.37886 * 119.99985 * 119.20629 * 11 9 6 14 14 N 1.31510 * 119.99681 * 187.14659 * 13 11 9 15 15 Si 1.86794 * 119.99815 * 7.14900 * 13 11 9 16 16 H 1.48502 * 109.47098 * 275.10054 * 15 13 11 17 17 H 1.48499 * 109.47519 * 35.09788 * 15 13 11 18 18 H 1.48494 * 109.47207 * 155.10126 * 15 13 11 19 19 H 1.09000 * 109.46685 * 291.46798 * 1 2 3 20 20 H 1.09002 * 109.46966 * 51.46395 * 1 2 3 21 21 H 1.08992 * 109.47425 * 171.46605 * 1 2 3 22 22 H 1.09002 * 110.75517 * 321.69721 * 4 2 1 23 23 H 1.09001 * 110.75663 * 85.06149 * 4 2 1 24 24 H 1.09001 * 110.48264 * 156.62180 * 5 4 2 25 25 H 1.08993 * 110.48443 * 279.26397 * 5 4 2 26 26 H 1.09003 * 109.46925 * 177.16889 * 7 6 5 27 27 H 1.09004 * 109.47071 * 297.16179 * 7 6 5 28 28 H 1.08994 * 109.47326 * 57.16666 * 7 6 5 29 29 H 1.08994 * 109.47473 * 302.83718 * 8 6 5 30 30 H 1.09007 * 109.46532 * 62.83766 * 8 6 5 31 31 H 1.09007 * 109.46908 * 182.83081 * 8 6 5 32 32 H 0.97009 * 119.99595 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7835 -1.2212 5 6 3.4907 -1.1990 -0.7585 6 6 3.3166 -1.5397 0.7359 7 6 4.5465 -1.0847 1.5240 8 6 3.1096 -3.0457 0.9095 9 6 2.0700 -0.7774 1.2183 10 1 2.3404 -0.0834 2.0140 11 6 1.0298 -1.7492 1.7128 12 1 0.6188 -2.4885 1.0412 13 6 0.6027 -1.6946 3.0227 14 7 -0.1972 -2.6266 3.4928 15 14 1.1603 -0.2969 4.1293 16 1 2.4810 -0.6305 4.7208 17 1 1.2763 0.9502 3.3314 18 1 0.1673 -0.0991 5.2155 19 1 -0.3633 0.3761 0.9564 20 1 -0.3633 0.6403 -0.8039 21 1 -0.3634 -1.0162 -0.1525 22 1 1.4580 -1.6618 -1.4201 23 1 2.1251 -0.1409 -2.0999 24 1 3.8315 -2.0739 -1.3121 25 1 4.1897 -0.3719 -0.8823 26 1 4.3927 -1.2840 2.5845 27 1 5.4236 -1.6300 1.1754 28 1 4.6996 -0.0161 1.3736 29 1 2.2467 -3.3637 0.3246 30 1 3.9974 -3.5764 0.5654 31 1 2.9376 -3.2698 1.9623 32 1 -0.4974 -2.5883 4.4145 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260980657.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:42 Heat of formation + Delta-G solvation = -30.141804 kcal Electronic energy + Delta-G solvation = -11969.415551 eV Core-core repulsion = 10121.722638 eV Total energy + Delta-G solvation = -1847.692912 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.54645 -32.55661 -32.23573 -29.16973 -26.82417 -26.14950 -23.20696 -22.51227 -18.90075 -17.56312 -16.66982 -14.62452 -14.23873 -13.66764 -13.01034 -12.61614 -12.45774 -12.40473 -11.83339 -11.78488 -11.21548 -10.85014 -10.80357 -10.67260 -10.54972 -9.80474 -9.69548 -9.65226 -9.52506 -9.21385 -9.09177 -8.60954 -8.38810 -5.98424 -3.90092 3.32995 3.41671 3.43898 4.49803 5.28034 5.47104 5.61188 5.69382 6.03906 6.15539 6.20636 6.33340 6.37360 6.44428 6.51612 6.58858 6.62762 6.72923 6.76564 6.81180 6.95308 7.01173 7.24453 7.31367 7.41508 7.43437 7.47748 7.64111 7.94139 8.66434 9.06583 9.66124 11.14924 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.037493 B = 0.019861 C = 0.017334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.632127 B = 1409.469479 C = 1614.911907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 H 0.043 0.957 4 C -0.112 4.112 5 C -0.114 4.114 6 C -0.067 4.067 7 C -0.135 4.135 8 C -0.103 4.103 9 C 0.017 3.983 10 H 0.033 0.967 11 C -0.481 4.481 12 H 0.076 0.924 13 C 0.067 3.933 14 N -0.905 5.905 15 Si 0.870 3.130 16 H -0.279 1.279 17 H -0.268 1.268 18 H -0.293 1.293 19 H 0.049 0.951 20 H 0.018 0.982 21 H 0.061 0.939 22 H 0.063 0.937 23 H 0.044 0.956 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.040 0.960 28 H 0.042 0.958 29 H 0.053 0.947 30 H 0.015 0.985 31 H 0.061 0.939 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.754 3.710 -5.442 8.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.112 4.112 3 H 0.061 0.939 4 C -0.149 4.149 5 C -0.151 4.151 6 C -0.068 4.068 7 C -0.192 4.192 8 C -0.160 4.160 9 C -0.002 4.002 10 H 0.051 0.949 11 C -0.518 4.518 12 H 0.094 0.906 13 C -0.133 4.133 14 N -0.544 5.544 15 Si 0.698 3.302 16 H -0.205 1.205 17 H -0.194 1.194 18 H -0.220 1.220 19 H 0.068 0.932 20 H 0.037 0.963 21 H 0.080 0.920 22 H 0.082 0.918 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.034 0.966 31 H 0.080 0.920 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.646 3.642 -5.262 8.534 hybrid contribution 0.269 0.765 0.784 1.128 sum 5.914 4.407 -4.478 8.629 Atomic orbital electron populations 1.21533 0.95295 1.01128 0.99108 1.22061 0.95794 0.96918 0.96385 0.93872 1.22455 0.96247 0.99410 0.96822 1.22439 0.96669 0.99291 0.96714 1.21369 0.95640 0.96903 0.92860 1.21901 0.97491 0.99550 1.00303 1.21598 0.98092 0.93773 1.02575 1.19967 0.92694 0.94235 0.93268 0.94880 1.20856 1.20112 1.15148 0.95726 0.90587 1.25033 0.95180 0.95435 0.97687 1.69907 1.35646 1.33252 1.15594 0.86968 0.78380 0.84291 0.80524 1.20474 1.19358 1.22009 0.93172 0.96268 0.91958 0.91797 0.93746 0.93069 0.93109 0.93175 0.94100 0.93874 0.92749 0.96585 0.92024 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.35 8.19 37.16 0.30 -2.05 16 2 C -0.09 -1.90 3.37 -88.96 -0.30 -2.20 16 3 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.11 -2.03 6.33 -24.74 -0.16 -2.19 16 5 C -0.11 -2.01 5.90 -25.07 -0.15 -2.16 16 6 C -0.07 -1.36 0.94 -153.39 -0.14 -1.50 16 7 C -0.14 -2.49 8.16 37.16 0.30 -2.19 16 8 C -0.10 -2.16 7.19 37.16 0.27 -1.90 16 9 C 0.02 0.40 2.41 -90.65 -0.22 0.18 16 10 H 0.03 0.79 4.32 -51.93 -0.22 0.57 16 11 C -0.48 -12.66 4.58 -34.44 -0.16 -12.82 16 12 H 0.08 2.19 6.69 -52.48 -0.35 1.83 16 13 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 14 N -0.91 -27.10 13.96 55.43 0.77 -26.33 16 15 Si 0.87 21.68 26.99 -169.99 -4.59 17.09 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.27 -6.51 6.74 56.52 0.38 -6.13 16 18 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 19 H 0.05 1.11 7.98 -51.93 -0.41 0.70 16 20 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 21 H 0.06 1.37 6.93 -51.93 -0.36 1.01 16 22 H 0.06 1.21 7.95 -51.93 -0.41 0.79 16 23 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.84 7.84 -51.93 -0.41 0.44 16 25 H 0.05 0.83 7.84 -51.93 -0.41 0.42 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.04 0.74 8.12 -51.93 -0.42 0.32 16 29 H 0.05 1.19 6.97 -51.93 -0.36 0.83 16 30 H 0.02 0.28 8.14 -51.92 -0.42 -0.14 16 31 H 0.06 1.43 7.51 -51.92 -0.39 1.04 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 243.75 15.07 3.67 3.67 Total: -1.00 -27.90 243.75 -5.93 -33.83 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -5.44 Total: -3.22 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: -0.35 Total: -25.05 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.77 Total: -26.33 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.59 Total: 17.09 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -27.90 -5.93 -33.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260980657.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.692 kcal (2) G-P(sol) polarization free energy of solvation -27.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds