Wall clock time and date at job start Mon Mar 30 2020 02:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.43786 * 2 1 4 4 C 1.54886 * 110.48633 * 237.31446 * 2 1 3 5 5 C 1.54893 * 102.75119 * 203.38069 * 4 2 1 6 6 C 1.54261 * 104.19448 * 37.94251 * 5 4 2 7 7 C 1.52998 * 110.03262 * 217.10751 * 6 5 4 8 8 C 1.53005 * 110.03253 * 95.67213 * 6 5 4 9 9 C 1.53874 * 106.60152 * 336.39209 * 6 5 4 10 10 H 1.08999 * 110.07266 * 240.69356 * 9 6 5 11 11 C 1.50697 * 110.03693 * 119.28210 * 9 6 5 12 12 H 1.08004 * 120.00121 * 299.21244 * 11 9 6 13 13 C 1.37886 * 119.99985 * 119.20629 * 11 9 6 14 14 N 1.31510 * 119.99681 * 187.14659 * 13 11 9 15 15 Si 1.86794 * 119.99815 * 7.14900 * 13 11 9 16 16 H 1.48502 * 109.47098 * 275.10054 * 15 13 11 17 17 H 1.48499 * 109.47519 * 35.09788 * 15 13 11 18 18 H 1.48494 * 109.47207 * 155.10126 * 15 13 11 19 19 H 1.09000 * 109.46685 * 291.46798 * 1 2 3 20 20 H 1.09002 * 109.46966 * 51.46395 * 1 2 3 21 21 H 1.08992 * 109.47425 * 171.46605 * 1 2 3 22 22 H 1.09002 * 110.75517 * 321.69721 * 4 2 1 23 23 H 1.09001 * 110.75663 * 85.06149 * 4 2 1 24 24 H 1.09001 * 110.48264 * 156.62180 * 5 4 2 25 25 H 1.08993 * 110.48443 * 279.26397 * 5 4 2 26 26 H 1.09003 * 109.46925 * 177.16889 * 7 6 5 27 27 H 1.09004 * 109.47071 * 297.16179 * 7 6 5 28 28 H 1.08994 * 109.47326 * 57.16666 * 7 6 5 29 29 H 1.08994 * 109.47473 * 302.83718 * 8 6 5 30 30 H 1.09007 * 109.46532 * 62.83766 * 8 6 5 31 31 H 1.09007 * 109.46908 * 182.83081 * 8 6 5 32 32 H 0.97009 * 119.99595 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7835 -1.2212 5 6 3.4907 -1.1990 -0.7585 6 6 3.3166 -1.5397 0.7359 7 6 4.5465 -1.0847 1.5240 8 6 3.1096 -3.0457 0.9095 9 6 2.0700 -0.7774 1.2183 10 1 2.3404 -0.0834 2.0140 11 6 1.0298 -1.7492 1.7128 12 1 0.6188 -2.4885 1.0412 13 6 0.6027 -1.6946 3.0227 14 7 -0.1972 -2.6266 3.4928 15 14 1.1603 -0.2969 4.1293 16 1 2.4810 -0.6305 4.7208 17 1 1.2763 0.9502 3.3314 18 1 0.1673 -0.0991 5.2155 19 1 -0.3633 0.3761 0.9564 20 1 -0.3633 0.6403 -0.8039 21 1 -0.3634 -1.0162 -0.1525 22 1 1.4580 -1.6618 -1.4201 23 1 2.1251 -0.1409 -2.0999 24 1 3.8315 -2.0739 -1.3121 25 1 4.1897 -0.3719 -0.8823 26 1 4.3927 -1.2840 2.5845 27 1 5.4236 -1.6300 1.1754 28 1 4.6996 -0.0161 1.3736 29 1 2.2467 -3.3637 0.3246 30 1 3.9974 -3.5764 0.5654 31 1 2.9376 -3.2698 1.9623 32 1 -0.4974 -2.5883 4.4145 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260980657.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:42 Heat of formation + Delta-G solvation = -45.677111 kcal Electronic energy + Delta-G solvation = -11970.089212 eV Core-core repulsion = 10121.722638 eV Total energy + Delta-G solvation = -1848.366574 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.18437 -34.51363 -33.96902 -30.86738 -28.49896 -27.88745 -25.09038 -24.03820 -20.56508 -19.33387 -18.62851 -16.28251 -16.11782 -15.41901 -14.61424 -14.42390 -14.25643 -13.99424 -13.52803 -13.39530 -12.89908 -12.73418 -12.59520 -12.41652 -12.11469 -11.69036 -11.35904 -11.19333 -11.11256 -10.93909 -10.82306 -10.53817 -10.46068 -8.15883 -6.08105 1.33192 1.36202 1.44402 2.41319 3.19605 3.91843 4.10450 4.13383 4.52241 4.62711 4.65479 4.78959 4.87331 4.93770 4.99544 5.02390 5.13744 5.18636 5.19889 5.21383 5.24622 5.45214 5.60872 5.64597 5.66541 5.70067 5.79389 5.93751 5.98737 6.53245 6.91774 7.49605 9.01245 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.037493 B = 0.019861 C = 0.017334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.632127 B = 1409.469479 C = 1614.911907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.096 4.096 3 H 0.063 0.937 4 C -0.107 4.107 5 C -0.105 4.105 6 C -0.073 4.073 7 C -0.133 4.133 8 C -0.097 4.097 9 C 0.006 3.994 10 H 0.025 0.975 11 C -0.454 4.454 12 H 0.039 0.961 13 C 0.006 3.994 14 N -0.956 5.956 15 Si 0.923 3.077 16 H -0.273 1.273 17 H -0.253 1.253 18 H -0.298 1.298 19 H 0.026 0.974 20 H 0.052 0.948 21 H 0.036 0.964 22 H 0.047 0.953 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.029 0.971 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.032 0.968 30 H 0.046 0.954 31 H 0.025 0.975 32 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.846 5.488 -6.958 11.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.115 4.115 3 H 0.082 0.918 4 C -0.145 4.145 5 C -0.142 4.142 6 C -0.073 4.073 7 C -0.190 4.190 8 C -0.154 4.154 9 C -0.013 4.013 10 H 0.043 0.957 11 C -0.493 4.493 12 H 0.057 0.943 13 C -0.188 4.188 14 N -0.599 5.599 15 Si 0.750 3.250 16 H -0.198 1.198 17 H -0.178 1.178 18 H -0.225 1.225 19 H 0.045 0.955 20 H 0.070 0.930 21 H 0.055 0.945 22 H 0.066 0.934 23 H 0.094 0.906 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.049 0.951 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.756 5.436 -6.796 11.658 hybrid contribution -0.404 0.154 1.175 1.252 sum 7.353 5.590 -5.621 10.812 Atomic orbital electron populations 1.21460 0.96041 1.00128 0.99087 1.22077 0.95244 0.97943 0.96238 0.91830 1.22419 0.96185 0.98987 0.96871 1.22399 0.96768 1.00887 0.94183 1.21360 0.95113 0.95421 0.95451 1.21869 0.97368 1.00990 0.98772 1.21493 0.98597 0.95416 0.99901 1.20090 0.93055 0.93820 0.94353 0.95676 1.20979 1.19551 1.14107 0.94640 0.94295 1.25737 0.95943 0.97679 0.99466 1.70053 1.38309 1.35632 1.15898 0.86081 0.77905 0.82145 0.78842 1.19819 1.17753 1.22498 0.95455 0.92957 0.94502 0.93438 0.90563 0.91559 0.90570 0.95149 0.91516 0.92209 0.94855 0.93508 0.95564 0.93332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.45 8.19 71.98 0.59 -3.86 16 2 C -0.10 -3.70 3.37 -9.72 -0.03 -3.73 16 3 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 4 C -0.11 -3.53 6.33 31.89 0.20 -3.32 16 5 C -0.11 -3.25 5.90 31.67 0.19 -3.07 16 6 C -0.07 -2.78 0.94 -51.46 -0.05 -2.83 16 7 C -0.13 -4.44 8.16 71.98 0.59 -3.86 16 8 C -0.10 -4.00 7.19 71.98 0.52 -3.48 16 9 C 0.01 0.26 2.41 -10.81 -0.03 0.23 16 10 H 0.03 1.15 4.32 -2.39 -0.01 1.14 16 11 C -0.45 -24.54 4.58 25.60 0.12 -24.42 16 12 H 0.04 2.35 6.69 -2.91 -0.02 2.33 16 13 C 0.01 0.37 5.47 84.66 0.46 0.84 16 14 N -0.96 -59.82 13.96 21.45 0.30 -59.52 16 15 Si 0.92 45.17 26.99 68.60 1.85 47.02 16 16 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 17 H -0.25 -11.64 6.74 99.48 0.67 -10.97 16 18 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 19 H 0.03 1.19 7.98 -2.39 -0.02 1.17 16 20 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 21 H 0.04 1.63 6.93 -2.39 -0.02 1.62 16 22 H 0.05 1.71 7.95 -2.39 -0.02 1.69 16 23 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.07 1.89 7.84 -2.39 -0.02 1.87 16 25 H 0.08 2.03 7.84 -2.39 -0.02 2.01 16 26 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 28 H 0.06 1.80 8.12 -2.39 -0.02 1.78 16 29 H 0.03 1.47 6.97 -2.39 -0.02 1.45 16 30 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.03 1.22 7.51 -2.38 -0.02 1.21 16 32 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 Total: -1.00 -61.52 243.75 5.73 -55.79 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: 1.02 Total: 4.21 kcal Atomic # 6 Polarization: -50.06 SS G_CDS: 2.56 Total: -47.51 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 0.30 Total: -59.52 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.85 Total: 47.02 kcal Total: -61.52 5.73 -55.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260980657.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.109 kcal (2) G-P(sol) polarization free energy of solvation -61.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds