Wall clock time and date at job start Mon Mar 30 2020 01:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47024 * 2 1 4 4 C 1.52997 * 109.47236 * 120.00477 * 2 1 3 5 5 C 1.53000 * 109.47060 * 65.00086 * 4 2 1 6 6 H 1.08999 * 115.54898 * 330.57913 * 5 4 2 7 7 C 1.53004 * 117.49960 * 116.25649 * 5 4 2 8 8 C 1.53002 * 117.49686 * 184.91457 * 5 4 2 9 9 H 1.09003 * 117.49973 * 359.97438 * 8 5 4 10 10 C 1.52999 * 117.50243 * 144.99386 * 8 5 4 11 11 C 1.50693 * 109.47307 * 184.99767 * 10 8 5 12 12 H 1.08001 * 120.00402 * 0.02562 * 11 10 8 13 13 C 1.37884 * 119.99706 * 180.02562 * 11 10 8 14 14 N 1.31512 * 120.00048 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99858 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46763 * 59.99922 * 15 13 11 17 17 H 1.48497 * 109.47203 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47141 * 300.00297 * 15 13 11 19 19 H 1.09000 * 109.47403 * 59.99547 * 1 2 3 20 20 H 1.09001 * 109.46917 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46741 * 299.99412 * 1 2 3 22 22 H 1.09004 * 109.46741 * 240.00588 * 2 1 3 23 23 H 1.09002 * 109.47016 * 180.02562 * 3 2 1 24 24 H 1.09000 * 109.47400 * 300.00455 * 3 2 1 25 25 H 1.09004 * 109.46881 * 60.00674 * 3 2 1 26 26 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 27 27 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 28 28 H 1.08995 * 117.49382 * 214.97713 * 7 5 4 29 29 H 1.08992 * 117.49332 * 359.97438 * 7 5 4 30 30 H 1.09006 * 109.47203 * 305.00251 * 10 8 5 31 31 H 1.09006 * 109.46948 * 64.99450 * 10 8 5 32 32 H 0.96996 * 119.99635 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6353 -2.1956 1.1877 6 1 0.7152 -2.4082 0.6434 7 6 2.7569 -3.2335 1.1122 8 6 1.9537 -3.0668 2.4045 9 1 2.4518 -2.5898 3.2486 10 6 0.9562 -4.1698 2.7641 11 6 1.3797 -4.8302 4.0507 12 1 2.2710 -4.4963 4.5612 13 6 0.6294 -5.8607 4.5762 14 7 -0.4562 -6.2669 3.9549 15 14 1.1540 -6.6789 6.1715 16 1 1.1865 -5.6679 7.2588 17 1 0.1859 -7.7495 6.5204 18 1 2.5063 -7.2690 6.0037 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 1.8933 -0.5138 -0.8901 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6767 1.9562 0.8901 26 1 1.6055 -0.2619 2.1369 27 1 3.1264 -0.6444 1.2950 28 1 2.5744 -4.1292 0.5184 29 1 3.7830 -2.8661 1.1058 30 1 -0.0362 -3.7361 2.8878 31 1 0.9315 -4.9117 1.9659 32 1 -0.9838 -6.9921 4.3244 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261006949.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:33 Heat of formation + Delta-G solvation = -15.160288 kcal Electronic energy + Delta-G solvation = -10771.361786 eV Core-core repulsion = 8924.318521 eV Total energy + Delta-G solvation = -1847.043265 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.84059 -35.10036 -32.66369 -28.65813 -27.09113 -26.46763 -23.11166 -20.93605 -19.44626 -19.24524 -16.27899 -15.17688 -14.56999 -14.07186 -13.96654 -13.19296 -12.55635 -12.25391 -12.15220 -12.06737 -11.59862 -11.22865 -10.98505 -10.78070 -10.63437 -10.55447 -10.45182 -10.25599 -9.75595 -9.26137 -8.97227 -8.62185 -8.22777 -5.95906 -3.97451 3.36204 3.40117 3.42935 4.47483 4.61694 4.97680 5.09123 5.14277 5.39434 5.64773 5.69622 5.72176 5.75747 5.86533 5.92688 5.96608 6.06199 6.20407 6.28785 6.37928 6.41287 6.54370 6.61016 6.85473 6.95681 7.18922 7.73354 7.84167 8.03759 8.48290 9.08143 9.65617 11.15438 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.077376 B = 0.007350 C = 0.007160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.783589 B = 3808.613576 C = 3909.937471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.079 4.079 5 C -0.171 4.171 6 H 0.098 0.902 7 C -0.186 4.186 8 C -0.114 4.114 9 H 0.089 0.911 10 C 0.047 3.953 11 C -0.515 4.515 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 H 0.047 0.953 20 H 0.061 0.939 21 H 0.053 0.947 22 H 0.067 0.933 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.020 0.980 31 H 0.018 0.982 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.571 10.828 -6.500 13.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.204 4.204 4 C -0.117 4.117 5 C -0.189 4.189 6 H 0.116 0.884 7 C -0.223 4.223 8 C -0.133 4.133 9 H 0.107 0.893 10 C 0.010 3.990 11 C -0.553 4.553 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 H 0.066 0.934 20 H 0.080 0.920 21 H 0.072 0.928 22 H 0.086 0.914 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.039 0.961 31 H 0.036 0.964 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.424 10.702 -6.485 12.973 hybrid contribution 0.259 -0.570 0.847 1.054 sum 3.683 10.131 -5.637 12.165 Atomic orbital electron populations 1.21885 0.95380 1.02238 1.01032 1.21083 0.95918 0.95427 0.98853 1.21850 1.00677 0.96519 1.01339 1.21185 0.99754 0.93640 0.97103 1.22484 0.99555 0.91257 1.05654 0.88368 1.23079 0.95050 1.00372 1.03757 1.22781 1.01040 0.99811 0.89637 0.89330 1.18757 0.92842 0.91035 0.96339 1.21219 1.09731 1.16917 1.07440 0.92720 1.25027 0.95046 0.97040 0.97461 1.69955 1.15789 1.28488 1.39489 0.86649 0.78321 0.79072 0.83902 1.20266 1.21311 1.20267 0.93413 0.92021 0.92824 0.91438 0.93001 0.93128 0.92843 0.92048 0.92540 0.89652 0.90408 0.96148 0.96408 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.01 37.16 0.33 -1.51 16 2 C -0.09 -1.19 2.92 -90.62 -0.26 -1.45 16 3 C -0.15 -1.56 9.19 37.16 0.34 -1.22 16 4 C -0.08 -1.17 4.96 -26.73 -0.13 -1.31 16 5 C -0.17 -3.07 5.24 -90.62 -0.47 -3.54 16 6 H 0.10 1.79 6.38 -51.93 -0.33 1.46 16 7 C -0.19 -3.47 9.83 -26.69 -0.26 -3.73 16 8 C -0.11 -2.48 5.42 -90.58 -0.49 -2.98 16 9 H 0.09 1.92 8.00 -51.93 -0.42 1.51 16 10 C 0.05 1.26 5.25 -27.89 -0.15 1.11 16 11 C -0.51 -14.95 9.08 -34.44 -0.31 -15.26 16 12 H 0.05 1.54 7.68 -52.49 -0.40 1.14 16 13 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.45 13.29 55.43 0.74 -26.72 16 15 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 20 H 0.06 0.84 6.40 -51.93 -0.33 0.51 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.80 7.88 -51.93 -0.41 0.39 16 28 H 0.08 1.63 8.03 -51.93 -0.42 1.21 16 29 H 0.08 1.31 8.03 -51.93 -0.42 0.89 16 30 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.02 0.50 7.88 -51.93 -0.41 0.09 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 264.23 15.07 3.98 3.98 Total: -1.00 -29.77 264.23 -7.46 -37.23 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -5.65 Total: -3.11 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: -1.51 Total: -28.37 kcal Atomic # 7 Polarization: -27.45 SS G_CDS: 0.74 Total: -26.72 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.77 -7.46 -37.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261006949.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.065 kcal (2) G-P(sol) polarization free energy of solvation -29.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds