Wall clock time and date at job start Mon Mar 30 2020 01:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47049 * 2 1 4 4 C 1.53010 * 109.47242 * 119.99881 * 2 1 3 5 5 C 1.52994 * 109.46910 * 65.00142 * 4 2 1 6 6 H 1.08998 * 115.56466 * 29.31155 * 5 4 2 7 7 C 1.53007 * 117.49846 * 243.62254 * 5 4 2 8 8 C 1.52998 * 117.49765 * 175.00077 * 5 4 2 9 9 H 1.09000 * 117.52031 * 214.96867 * 8 5 4 10 10 C 1.53004 * 117.49983 * 0.02562 * 8 5 4 11 11 C 1.50701 * 109.47211 * 185.01581 * 10 8 5 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 10 8 13 13 C 1.37871 * 119.99694 * 180.27574 * 11 10 8 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 10 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 10 16 16 H 1.48494 * 109.47230 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.47301 * 119.99669 * 15 13 11 18 18 H 1.48498 * 109.47430 * 239.99516 * 15 13 11 19 19 H 1.08999 * 109.47365 * 60.00377 * 1 2 3 20 20 H 1.09000 * 109.47042 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47546 * 299.99877 * 1 2 3 22 22 H 1.08993 * 109.47606 * 239.99668 * 2 1 3 23 23 H 1.08996 * 109.47619 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47232 * 300.00095 * 3 2 1 25 25 H 1.09005 * 109.46846 * 59.99694 * 3 2 1 26 26 H 1.09004 * 109.46826 * 304.99862 * 4 2 1 27 27 H 1.08992 * 109.46917 * 185.00683 * 4 2 1 28 28 H 1.08993 * 117.49570 * 145.02085 * 7 5 4 29 29 H 1.08999 * 117.49874 * 0.02562 * 7 5 4 30 30 H 1.09000 * 109.47211 * 65.00608 * 10 8 5 31 31 H 1.09007 * 109.46376 * 305.01150 * 10 8 5 32 32 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6353 -2.1954 1.1880 6 1 1.5389 -2.6155 0.1869 7 6 0.6790 -2.7109 2.2655 8 6 2.1539 -3.1169 2.2938 9 1 2.3987 -4.1433 2.0205 10 6 3.0371 -2.4936 3.3766 11 6 3.5436 -3.5750 4.2958 12 1 3.2633 -4.6039 4.1251 13 6 4.3599 -3.2500 5.3584 14 7 4.7010 -1.9971 5.5665 15 14 4.9813 -4.5895 6.5025 16 1 4.4574 -5.9050 6.0552 17 1 6.4660 -4.6129 6.4769 18 1 4.5144 -4.3155 7.8853 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8934 -0.5138 -0.8899 23 1 3.1299 1.4426 0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6765 1.9563 0.8900 26 1 1.6054 -0.2617 2.1370 27 1 3.1263 -0.6442 1.2952 28 1 -0.0464 -3.4700 1.9731 29 1 0.3380 -1.9996 3.0177 30 1 2.4547 -1.7725 3.9500 31 1 3.8826 -1.9884 2.9094 32 1 5.2749 -1.7684 6.3142 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261006950.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:35 Heat of formation + Delta-G solvation = -30.462937 kcal Electronic energy + Delta-G solvation = -10938.346599 eV Core-core repulsion = 9090.639761 eV Total energy + Delta-G solvation = -1847.706838 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.40616 -36.26097 -34.78821 -30.38461 -28.15062 -27.92197 -25.33274 -22.28010 -21.25452 -20.00823 -18.56383 -16.61959 -16.19055 -15.83747 -15.06226 -14.55504 -14.31838 -13.80962 -13.71611 -13.24803 -12.99943 -12.78506 -12.71277 -12.40812 -12.30053 -11.86969 -11.64748 -11.55457 -11.39291 -11.23883 -10.77759 -10.42430 -10.22695 -8.19989 -6.30719 1.38843 1.39304 1.52910 2.40451 3.04279 3.15460 3.79545 4.05185 4.09146 4.25601 4.30963 4.43437 4.66676 4.84529 4.85740 4.88443 4.89588 5.03123 5.07830 5.13314 5.23183 5.32769 5.34360 5.49586 5.52290 5.55910 5.62086 5.69327 5.84482 6.27896 6.85200 7.37952 8.91831 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.066688 B = 0.008464 C = 0.007792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.763299 B = 3307.443655 C = 3592.532653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 C -0.147 4.147 4 C -0.079 4.079 5 C -0.139 4.139 6 H 0.116 0.884 7 C -0.169 4.169 8 C -0.154 4.154 9 H 0.088 0.912 10 C 0.062 3.938 11 C -0.540 4.540 12 H 0.058 0.942 13 C -0.002 4.002 14 N -0.934 5.934 15 Si 0.966 3.034 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.277 1.277 19 H 0.066 0.934 20 H 0.056 0.944 21 H 0.045 0.955 22 H 0.075 0.925 23 H 0.047 0.953 24 H 0.071 0.929 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.105 0.895 29 H 0.076 0.924 30 H -0.011 1.011 31 H -0.009 1.009 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.046 2.543 -10.034 12.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 C -0.204 4.204 4 C -0.117 4.117 5 C -0.157 4.157 6 H 0.134 0.866 7 C -0.206 4.206 8 C -0.173 4.173 9 H 0.107 0.893 10 C 0.025 3.975 11 C -0.578 4.578 12 H 0.076 0.924 13 C -0.200 4.200 14 N -0.574 5.574 15 Si 0.791 3.209 16 H -0.187 1.187 17 H -0.202 1.202 18 H -0.203 1.203 19 H 0.085 0.915 20 H 0.075 0.925 21 H 0.064 0.936 22 H 0.094 0.906 23 H 0.067 0.933 24 H 0.090 0.910 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.124 0.876 29 H 0.094 0.906 30 H 0.007 0.993 31 H 0.009 0.991 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.958 2.653 -9.924 12.407 hybrid contribution 0.610 -0.449 1.011 1.263 sum -6.348 2.204 -8.913 11.162 Atomic orbital electron populations 1.21793 0.94327 1.02019 1.01608 1.21100 0.96679 0.96020 0.96969 1.21843 1.00719 0.95811 1.02047 1.21134 0.99432 0.92962 0.98131 1.22434 1.03681 0.95042 0.94516 0.86614 1.23060 0.92570 1.03438 1.01483 1.22512 0.96269 0.98723 0.99762 0.89342 1.18451 0.92881 0.94434 0.91715 1.21750 1.29501 0.94583 1.11916 0.92414 1.25996 0.96507 0.97922 0.99546 1.70106 1.37291 1.19038 1.30992 0.85382 0.78053 0.79218 0.78292 1.18662 1.20234 1.20296 0.91472 0.92458 0.93567 0.90614 0.93348 0.90963 0.93360 0.93813 0.93856 0.87641 0.90557 0.99268 0.99062 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 9.01 71.98 0.65 -2.49 16 2 C -0.09 -2.28 2.88 -10.79 -0.03 -2.31 16 3 C -0.15 -3.44 9.19 71.98 0.66 -2.78 16 4 C -0.08 -2.70 4.04 30.60 0.12 -2.58 16 5 C -0.14 -4.78 4.72 -10.79 -0.05 -4.83 16 6 H 0.12 3.39 8.07 -2.39 -0.02 3.37 16 7 C -0.17 -6.05 9.82 30.60 0.30 -5.75 16 8 C -0.15 -6.72 5.70 -10.79 -0.06 -6.79 16 9 H 0.09 3.81 8.00 -2.39 -0.02 3.79 16 10 C 0.06 3.42 4.33 29.85 0.13 3.55 16 11 C -0.54 -31.93 9.08 25.60 0.23 -31.70 16 12 H 0.06 3.30 7.68 -2.91 -0.02 3.28 16 13 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 14 N -0.93 -58.20 13.29 21.45 0.28 -57.92 16 15 Si 0.97 45.36 29.54 68.60 2.03 47.38 16 16 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 19 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 20 H 0.06 1.29 7.38 -2.39 -0.02 1.27 16 21 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 22 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 26 H 0.04 1.63 7.88 -2.39 -0.02 1.61 16 27 H 0.04 1.67 7.60 -2.39 -0.02 1.65 16 28 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 29 H 0.08 2.89 7.92 -2.39 -0.02 2.87 16 30 H -0.01 -0.66 7.87 -2.39 -0.02 -0.67 16 31 H -0.01 -0.53 7.60 -2.38 -0.02 -0.55 16 32 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -64.53 263.69 5.77 -58.76 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 1.04 Total: 7.14 kcal Atomic # 6 Polarization: -57.78 SS G_CDS: 2.42 Total: -55.36 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: 0.28 Total: -57.92 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -64.53 5.77 -58.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261006950.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.295 kcal (2) G-P(sol) polarization free energy of solvation -64.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds