Wall clock time and date at job start Mon Mar 30 2020 01:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46812 * 2 1 4 4 C 1.53001 * 109.47104 * 119.99946 * 2 1 3 5 5 C 1.52998 * 109.46843 * 65.00062 * 4 2 1 6 6 H 1.08990 * 115.56470 * 330.69100 * 5 4 2 7 7 C 1.53000 * 117.49463 * 116.38050 * 5 4 2 8 8 C 1.52997 * 60.00347 * 107.48750 * 7 5 4 9 9 H 1.08997 * 117.50044 * 107.48590 * 8 7 5 10 10 C 1.53001 * 117.51528 * 252.52230 * 8 7 5 11 11 C 1.50704 * 109.46499 * 243.62234 * 10 8 7 12 12 H 1.07997 * 120.00471 * 0.02562 * 11 10 8 13 13 C 1.37883 * 119.99535 * 179.97438 * 11 10 8 14 14 N 1.31512 * 120.00253 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99742 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47436 * 60.00314 * 15 13 11 17 17 H 1.48504 * 109.47258 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47507 * 300.00388 * 15 13 11 19 19 H 1.08995 * 109.47343 * 299.99982 * 1 2 3 20 20 H 1.09000 * 109.47115 * 60.00270 * 1 2 3 21 21 H 1.09002 * 109.47087 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47171 * 240.00512 * 2 1 3 23 23 H 1.09003 * 109.46715 * 180.02562 * 3 2 1 24 24 H 1.09000 * 109.47060 * 299.99764 * 3 2 1 25 25 H 1.08998 * 109.46835 * 60.00306 * 3 2 1 26 26 H 1.09000 * 109.47190 * 305.00180 * 4 2 1 27 27 H 1.09001 * 109.46634 * 185.00152 * 4 2 1 28 28 H 1.09002 * 117.49696 * 214.97963 * 7 5 4 29 29 H 1.09002 * 117.50343 * 359.97438 * 7 5 4 30 30 H 1.08989 * 109.47304 * 3.62247 * 10 8 7 31 31 H 1.09003 * 109.47230 * 123.62620 * 10 8 7 32 32 H 0.96998 * 120.00095 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1879 6 1 0.7162 -2.4085 0.6421 7 6 2.7569 -3.2335 1.1154 8 6 1.9518 -3.0662 2.4056 9 1 1.2409 -3.8521 2.6607 10 6 2.6483 -2.3958 3.5915 11 6 2.7613 -3.3784 4.7285 12 1 2.3755 -4.3808 4.6164 13 6 3.3585 -2.9979 5.9116 14 7 3.8288 -1.7774 6.0481 15 14 3.4993 -4.2161 7.3208 16 1 4.2919 -5.3923 6.8810 17 1 4.1763 -3.5658 8.4715 18 1 2.1421 -4.6588 7.7299 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5137 -0.8900 23 1 3.1300 1.4426 -0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 1.6054 -0.2617 2.1370 27 1 3.1263 -0.6443 1.2951 28 1 2.5757 -4.1295 0.5217 29 1 3.7831 -2.8662 1.1109 30 1 3.6445 -2.0710 3.2915 31 1 2.0664 -1.5323 3.9140 32 1 4.2486 -1.5096 6.8805 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261006951.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:36 Heat of formation + Delta-G solvation = -29.748020 kcal Electronic energy + Delta-G solvation = -10927.484794 eV Core-core repulsion = 9079.808957 eV Total energy + Delta-G solvation = -1847.675837 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.40068 -36.29764 -34.79535 -30.38927 -28.14142 -27.93437 -25.34240 -22.40965 -21.13042 -19.97696 -18.56518 -16.73574 -16.31924 -15.70545 -14.93568 -14.68455 -14.31739 -13.85066 -13.63534 -13.22947 -12.93852 -12.90353 -12.68748 -12.46258 -12.41005 -11.76865 -11.71919 -11.52004 -11.36591 -11.20230 -10.77717 -10.44026 -10.23403 -8.19662 -6.30608 1.38739 1.42325 1.50258 2.40614 3.03561 3.15253 3.80347 4.02932 4.07880 4.27566 4.31774 4.42764 4.55450 4.82956 4.84361 4.88576 4.97963 5.01574 5.08162 5.11504 5.18259 5.31859 5.32641 5.45917 5.54204 5.57976 5.62115 5.69203 5.84232 6.27761 6.84873 7.37891 8.91763 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.061743 B = 0.008491 C = 0.007945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.380863 B = 3296.828580 C = 3523.594476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 C -0.147 4.147 4 C -0.079 4.079 5 C -0.143 4.143 6 H 0.119 0.881 7 C -0.172 4.172 8 C -0.153 4.153 9 H 0.089 0.911 10 C 0.063 3.937 11 C -0.542 4.542 12 H 0.058 0.942 13 C -0.002 4.002 14 N -0.934 5.934 15 Si 0.966 3.034 16 H -0.267 1.267 17 H -0.281 1.281 18 H -0.266 1.266 19 H 0.045 0.955 20 H 0.069 0.931 21 H 0.057 0.943 22 H 0.077 0.923 23 H 0.049 0.951 24 H 0.072 0.928 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.106 0.894 29 H 0.077 0.923 30 H -0.011 1.011 31 H -0.009 1.009 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.795 1.987 -11.270 12.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 C -0.204 4.204 4 C -0.116 4.116 5 C -0.161 4.161 6 H 0.137 0.863 7 C -0.209 4.209 8 C -0.171 4.171 9 H 0.107 0.893 10 C 0.026 3.974 11 C -0.580 4.580 12 H 0.076 0.924 13 C -0.199 4.199 14 N -0.574 5.574 15 Si 0.790 3.210 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.191 1.191 19 H 0.064 0.936 20 H 0.088 0.912 21 H 0.076 0.924 22 H 0.095 0.905 23 H 0.068 0.932 24 H 0.091 0.909 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.124 0.876 29 H 0.095 0.905 30 H 0.007 0.993 31 H 0.009 0.991 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.707 2.107 -11.152 12.287 hybrid contribution 0.379 -0.411 1.124 1.255 sum -4.328 1.696 -10.029 11.054 Atomic orbital electron populations 1.21865 0.94541 1.01990 1.01804 1.21068 0.96510 0.96026 0.97115 1.21843 1.00776 0.95745 1.02023 1.21124 0.99389 0.93137 0.97991 1.22535 0.99645 0.92273 1.01670 0.86300 1.23090 0.95904 1.01205 1.00721 1.22493 1.02710 1.01999 0.89893 0.89316 1.18437 0.93092 0.94257 0.91620 1.21701 1.38094 0.98890 0.99342 0.92379 1.25999 0.95012 0.97249 1.01655 1.70094 1.40427 1.19669 1.27195 0.85492 0.78748 0.78797 0.77956 1.19210 1.20674 1.19134 0.93579 0.91215 0.92428 0.90481 0.93201 0.90944 0.93460 0.93850 0.93818 0.87567 0.90489 0.99281 0.99084 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.01 71.98 0.65 -2.64 16 2 C -0.09 -2.27 2.92 -10.79 -0.03 -2.31 16 3 C -0.15 -3.43 9.19 71.99 0.66 -2.77 16 4 C -0.08 -2.71 4.04 30.59 0.12 -2.58 16 5 C -0.14 -4.97 5.52 -10.79 -0.06 -5.03 16 6 H 0.12 3.50 6.38 -2.39 -0.02 3.49 16 7 C -0.17 -6.24 9.82 30.59 0.30 -5.93 16 8 C -0.15 -6.67 5.69 -10.79 -0.06 -6.73 16 9 H 0.09 3.83 8.00 -2.39 -0.02 3.81 16 10 C 0.06 3.47 4.34 29.85 0.13 3.60 16 11 C -0.54 -32.13 9.08 25.60 0.23 -31.90 16 12 H 0.06 3.30 7.68 -2.91 -0.02 3.28 16 13 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 14 N -0.93 -58.25 13.29 21.45 0.28 -57.97 16 15 Si 0.97 45.32 29.54 68.60 2.03 47.34 16 16 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 17 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 19 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 20 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 21 H 0.06 1.29 6.41 -2.39 -0.02 1.27 16 22 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16 23 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.04 1.68 7.60 -2.39 -0.02 1.66 16 27 H 0.04 1.63 7.88 -2.39 -0.02 1.61 16 28 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 29 H 0.08 2.93 7.92 -2.39 -0.02 2.91 16 30 H -0.01 -0.67 7.88 -2.39 -0.02 -0.68 16 31 H -0.01 -0.54 7.60 -2.39 -0.02 -0.56 16 32 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -64.60 261.86 5.77 -58.83 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: 1.05 Total: 7.73 kcal Atomic # 6 Polarization: -58.34 SS G_CDS: 2.41 Total: -55.93 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: 0.28 Total: -57.97 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -64.60 5.77 -58.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261006951.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.084 kcal (2) G-P(sol) polarization free energy of solvation -64.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds