Wall clock time and date at job start Mon Mar 30 2020 02:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30560 * 1 3 3 Si 1.86803 * 119.99716 * 2 1 4 4 H 1.48493 * 109.47367 * 274.98207 * 3 2 1 5 5 H 1.48511 * 109.46921 * 34.98160 * 3 2 1 6 6 H 1.48492 * 109.47302 * 154.97812 * 3 2 1 7 7 C 1.40456 * 120.00399 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00086 * 186.00855 * 7 2 1 9 9 C 1.39935 * 119.99917 * 6.01609 * 7 2 1 10 10 C 1.39256 * 126.31866 * 174.55304 * 9 7 2 11 11 C 1.40613 * 107.49981 * 180.11162 * 10 9 7 12 12 C 1.48233 * 125.84478 * 179.89171 * 11 10 9 13 13 O 1.21413 * 119.99564 * 359.71864 * 12 11 10 14 14 O 1.34648 * 120.00068 * 179.71246 * 12 11 10 15 15 N 1.31462 * 108.31641 * 359.62738 * 11 10 9 16 16 O 1.35079 * 126.31963 * 354.24856 * 9 7 2 17 17 H 0.96998 * 120.00632 * 0.02562 * 1 2 3 18 18 H 1.08002 * 126.25536 * 359.96528 * 10 9 7 19 19 H 0.96700 * 116.99783 * 180.02562 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2395 1.6178 0.0000 4 1 2.3817 2.1073 -1.3947 5 1 1.4934 2.6201 0.8027 6 1 3.5857 1.4123 0.5921 7 6 2.0080 -1.2163 0.0005 8 1 3.0835 -1.2188 0.0984 9 6 1.3141 -2.4250 -0.1259 10 6 1.8796 -3.6917 -0.2476 11 6 0.8258 -4.6169 -0.3515 12 6 0.9707 -6.0847 -0.4999 13 8 2.0766 -6.5838 -0.5462 14 8 -0.1239 -6.8643 -0.5834 15 7 -0.3101 -3.9581 -0.2886 16 8 -0.0277 -2.5788 -0.1468 17 1 -0.4851 0.8400 -0.0004 18 1 2.9348 -3.9215 -0.2622 19 1 0.0209 -7.8156 -0.6790 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261014731.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:04 Heat of formation + Delta-G solvation = -64.407189 kcal Electronic energy + Delta-G solvation = -10411.594451 eV Core-core repulsion = 8089.490486 eV Total energy + Delta-G solvation = -2322.103966 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 183.036 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.00762 -39.08368 -35.67773 -34.13662 -31.87522 -29.77297 -25.74696 -24.41104 -20.78345 -19.52306 -18.18024 -17.31011 -15.55281 -15.26711 -15.10899 -14.39172 -13.82133 -13.11767 -12.85594 -12.18685 -11.61075 -11.47455 -11.22856 -10.93646 -10.48408 -10.32603 -9.89314 -9.71984 -9.37458 -7.84045 -7.22643 -5.07441 1.89890 2.70495 2.87775 2.94152 3.30380 3.31880 3.62706 4.00996 4.68068 4.86281 5.67565 6.45101 6.65107 6.69557 6.91962 6.96556 7.43268 7.76682 8.07187 8.22408 8.33259 9.00102 9.73956 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.105979 B = 0.010405 C = 0.009515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 264.139579 B = 2690.257348 C = 2942.108037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.064 3.936 3 Si 0.934 3.066 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.254 1.254 7 C -0.415 4.415 8 H 0.113 0.887 9 C 0.229 3.771 10 C -0.405 4.405 11 C 0.078 3.922 12 C 0.570 3.430 13 O -0.511 6.511 14 O -0.503 6.503 15 N -0.393 5.393 16 O -0.061 6.061 17 H 0.295 0.705 18 H 0.130 0.870 19 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.833 -0.996 -0.311 2.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.162 4.162 3 Si 0.756 3.244 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.178 1.178 7 C -0.445 4.445 8 H 0.131 0.869 9 C 0.168 3.832 10 C -0.438 4.438 11 C -0.081 4.081 12 C 0.412 3.588 13 O -0.397 6.397 14 O -0.313 6.313 15 N -0.150 5.150 16 O -0.071 6.071 17 H 0.106 0.894 18 H 0.148 0.852 19 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 0.487 -0.749 -0.294 0.940 hybrid contribution 1.273 0.018 -0.075 1.275 sum 1.760 -0.731 -0.368 1.941 Atomic orbital electron populations 1.69666 1.07968 1.31185 1.27928 1.26398 0.95164 1.02754 0.91904 0.85846 0.80322 0.78504 0.79681 1.18741 1.19516 1.17780 1.19175 0.95777 0.87387 1.42173 0.86923 1.20135 0.82454 0.93720 0.86849 1.21719 0.98287 0.89276 1.34562 1.21132 0.95207 0.89780 1.01966 1.20026 0.81261 0.86201 0.71309 1.90816 1.27238 1.75005 1.46669 1.84719 1.37716 1.23924 1.84903 1.80406 1.17122 0.86478 1.30968 1.89370 1.21143 1.19111 1.77516 0.89352 0.85159 0.73708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -18.55 12.04 55.57 0.67 -17.88 13 2 C 0.06 1.50 5.50 -17.26 -0.09 1.40 13 3 Si 0.93 16.78 29.57 -169.99 -5.03 11.75 13 4 H -0.26 -4.65 7.11 56.52 0.40 -4.25 13 5 H -0.27 -4.73 7.11 56.52 0.40 -4.33 13 6 H -0.25 -4.43 7.11 56.52 0.40 -4.03 13 7 C -0.41 -10.40 9.34 -38.11 -0.36 -10.75 13 8 H 0.11 2.56 7.86 -52.49 -0.41 2.15 13 9 C 0.23 6.27 6.87 -38.57 -0.26 6.01 13 10 C -0.41 -10.60 10.62 -38.31 -0.41 -11.00 13 11 C 0.08 1.99 7.11 -83.02 -0.59 1.40 13 12 C 0.57 12.29 8.36 34.84 0.29 12.58 13 13 O -0.51 -11.35 17.68 -19.20 -0.34 -11.69 13 14 O -0.50 -8.74 13.43 -40.35 -0.54 -9.28 13 15 N -0.39 -10.84 12.95 33.31 0.43 -10.40 13 16 O -0.06 -1.77 10.49 6.87 0.07 -1.70 13 17 H 0.30 6.46 8.29 -40.82 -0.34 6.12 13 18 H 0.13 3.19 8.06 -52.49 -0.42 2.77 13 19 H 0.41 4.32 9.11 45.56 0.42 4.74 13 LS Contribution 198.59 15.07 2.99 2.99 Total: -1.00 -30.68 198.59 -2.72 -33.40 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: 0.45 Total: 3.17 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -1.42 Total: -0.36 kcal Atomic # 7 Polarization: -29.39 SS G_CDS: 1.10 Total: -28.29 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.81 Total: -22.66 kcal Atomic # 14 Polarization: 16.78 SS G_CDS: -5.03 Total: 11.75 kcal Total LS contribution 2.99 Total: 2.99 kcal Total: -30.68 -2.72 -33.40 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261014731.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.010 kcal (2) G-P(sol) polarization free energy of solvation -30.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds