Wall clock time and date at job start Mon Mar 30 2020 02:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30560 * 1 3 3 Si 1.86803 * 119.99716 * 2 1 4 4 H 1.48493 * 109.47367 * 274.98207 * 3 2 1 5 5 H 1.48511 * 109.46921 * 34.98160 * 3 2 1 6 6 H 1.48492 * 109.47302 * 154.97812 * 3 2 1 7 7 C 1.40456 * 120.00399 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00086 * 186.00855 * 7 2 1 9 9 C 1.39935 * 119.99917 * 6.01609 * 7 2 1 10 10 C 1.39256 * 126.31866 * 174.55304 * 9 7 2 11 11 C 1.40613 * 107.49981 * 180.11162 * 10 9 7 12 12 C 1.48233 * 125.84478 * 179.89171 * 11 10 9 13 13 O 1.21413 * 119.99564 * 359.71864 * 12 11 10 14 14 O 1.34648 * 120.00068 * 179.71246 * 12 11 10 15 15 N 1.31462 * 108.31641 * 359.62738 * 11 10 9 16 16 O 1.35079 * 126.31963 * 354.24856 * 9 7 2 17 17 H 0.96998 * 120.00632 * 0.02562 * 1 2 3 18 18 H 1.08002 * 126.25536 * 359.96528 * 10 9 7 19 19 H 0.96700 * 116.99783 * 180.02562 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2395 1.6178 0.0000 4 1 2.3817 2.1073 -1.3947 5 1 1.4934 2.6201 0.8027 6 1 3.5857 1.4123 0.5921 7 6 2.0080 -1.2163 0.0005 8 1 3.0835 -1.2188 0.0984 9 6 1.3141 -2.4250 -0.1259 10 6 1.8796 -3.6917 -0.2476 11 6 0.8258 -4.6169 -0.3515 12 6 0.9707 -6.0847 -0.4999 13 8 2.0766 -6.5838 -0.5462 14 8 -0.1239 -6.8643 -0.5834 15 7 -0.3101 -3.9581 -0.2886 16 8 -0.0277 -2.5788 -0.1468 17 1 -0.4851 0.8400 -0.0004 18 1 2.9348 -3.9215 -0.2622 19 1 0.0209 -7.8156 -0.6790 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261014731.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:03 Heat of formation + Delta-G solvation = -87.325731 kcal Electronic energy + Delta-G solvation = -10412.588274 eV Core-core repulsion = 8089.490486 eV Total energy + Delta-G solvation = -2323.097788 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 183.036 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.87453 -40.84913 -37.24349 -36.01247 -33.87066 -31.75782 -27.70814 -26.19895 -22.68186 -21.38614 -20.01363 -18.95818 -17.40774 -16.96690 -16.81104 -16.23468 -15.80526 -14.87907 -14.48409 -14.02073 -13.36559 -13.05812 -12.78002 -12.76698 -12.07391 -11.95773 -11.71416 -11.67459 -11.29223 -9.86445 -9.02399 -7.06533 0.05350 1.04828 1.40148 1.61372 1.65889 1.68031 2.12138 2.15905 2.78799 2.95529 3.89379 4.58211 4.83453 4.91233 4.97860 5.31075 5.48181 5.88198 6.17075 6.27933 6.79401 7.03322 7.97780 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.105979 B = 0.010405 C = 0.009515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 264.139579 B = 2690.257348 C = 2942.108037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.019 3.981 3 Si 1.021 2.979 4 H -0.255 1.255 5 H -0.261 1.261 6 H -0.242 1.242 7 C -0.423 4.423 8 H 0.134 0.866 9 C 0.195 3.805 10 C -0.423 4.423 11 C 0.073 3.927 12 C 0.582 3.418 13 O -0.518 6.518 14 O -0.491 6.491 15 N -0.420 5.420 16 O -0.097 6.097 17 H 0.308 0.692 18 H 0.141 0.859 19 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.826 -0.174 -0.324 2.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.204 4.204 3 Si 0.837 3.163 4 H -0.180 1.180 5 H -0.185 1.185 6 H -0.164 1.164 7 C -0.452 4.452 8 H 0.151 0.849 9 C 0.135 3.865 10 C -0.456 4.456 11 C -0.086 4.086 12 C 0.424 3.576 13 O -0.406 6.406 14 O -0.305 6.305 15 N -0.181 5.181 16 O -0.105 6.105 17 H 0.120 0.880 18 H 0.159 0.841 19 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges 1.465 0.031 -0.306 1.497 hybrid contribution 0.923 -0.258 -0.069 0.961 sum 2.388 -0.227 -0.376 2.428 Atomic orbital electron populations 1.69732 1.10087 1.33298 1.27242 1.27630 0.95878 1.06502 0.90366 0.84605 0.79013 0.72593 0.80094 1.17954 1.18487 1.16441 1.19837 0.96963 0.87681 1.40713 0.84882 1.20748 0.82342 0.95227 0.88137 1.21919 0.98919 0.89328 1.35458 1.21658 0.94481 0.92095 1.00320 1.19373 0.81825 0.85066 0.71365 1.90814 1.27742 1.74851 1.47186 1.84633 1.35643 1.26293 1.83896 1.80313 1.18169 0.86058 1.33531 1.89300 1.22107 1.20242 1.78853 0.88006 0.84147 0.69960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -38.86 12.04 21.91 0.26 -38.60 13 2 C 0.02 0.88 5.50 85.42 0.47 1.35 13 3 Si 1.02 32.48 29.57 68.60 2.03 34.51 13 4 H -0.26 -7.82 7.11 99.48 0.71 -7.12 13 5 H -0.26 -7.86 7.11 99.48 0.71 -7.15 13 6 H -0.24 -7.17 7.11 99.48 0.71 -6.46 13 7 C -0.42 -21.06 9.34 23.22 0.22 -20.84 13 8 H 0.13 5.87 7.86 -2.91 -0.02 5.85 13 9 C 0.19 10.88 6.87 22.93 0.16 11.04 13 10 C -0.42 -22.41 10.62 23.09 0.25 -22.17 13 11 C 0.07 3.76 7.11 42.44 0.30 4.06 13 12 C 0.58 24.49 8.36 70.48 0.59 25.08 13 13 O -0.52 -22.29 17.68 20.12 0.36 -21.93 13 14 O -0.49 -16.05 13.43 -55.57 -0.75 -16.80 13 15 N -0.42 -23.66 12.95 -48.52 -0.63 -24.29 13 16 O -0.10 -5.82 10.49 26.87 0.28 -5.54 13 17 H 0.31 13.33 8.29 -92.71 -0.77 12.56 13 18 H 0.14 6.91 8.06 -2.91 -0.02 6.88 13 19 H 0.44 7.95 9.11 -74.06 -0.67 7.28 13 Total: -1.00 -66.46 198.59 4.17 -62.29 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.63 Total: 11.84 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 1.98 Total: -1.48 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: -0.36 Total: -62.89 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -0.11 Total: -44.27 kcal Atomic # 14 Polarization: 32.48 SS G_CDS: 2.03 Total: 34.51 kcal Total: -66.46 4.17 -62.29 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261014731.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.035 kcal (2) G-P(sol) polarization free energy of solvation -66.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds