Wall clock time and date at job start Mon Mar 30 2020 01:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46810 * 2 1 4 4 C 1.50701 * 109.47118 * 55.75627 * 3 2 1 5 5 H 1.08002 * 119.99616 * 237.06520 * 4 3 2 6 6 C 1.37868 * 120.00101 * 57.34416 * 4 3 2 7 7 N 1.31511 * 120.00602 * 6.02172 * 6 4 3 8 8 Si 1.86809 * 119.99874 * 186.02565 * 6 4 3 9 9 H 1.48499 * 109.46794 * 59.99524 * 8 6 4 10 10 H 1.48500 * 109.47185 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46866 * 300.00063 * 8 6 4 12 12 C 1.53005 * 109.47053 * 175.75400 * 3 2 1 13 13 C 1.52999 * 109.47349 * 179.97438 * 12 3 2 14 14 C 1.52997 * 109.46750 * 300.00068 * 13 12 3 15 15 C 1.52997 * 109.47389 * 60.00036 * 14 13 12 16 16 C 1.52998 * 109.47187 * 295.75137 * 3 2 1 17 17 H 1.09001 * 109.46642 * 62.82794 * 1 2 3 18 18 H 1.08996 * 109.46486 * 182.82535 * 1 2 3 19 19 H 1.09001 * 109.47187 * 302.82435 * 1 2 3 20 20 H 1.08998 * 109.47795 * 239.99861 * 2 1 3 21 21 H 1.08998 * 109.47120 * 119.99212 * 2 1 3 22 22 H 0.96996 * 120.00274 * 180.02562 * 7 6 4 23 23 H 1.09003 * 109.46990 * 299.99638 * 12 3 2 24 24 H 1.08994 * 109.47226 * 59.99848 * 12 3 2 25 25 H 1.08994 * 109.47118 * 179.97438 * 13 12 3 26 26 H 1.09000 * 109.47291 * 59.99400 * 13 12 3 27 27 H 1.09001 * 109.47415 * 299.99748 * 14 13 12 28 28 H 1.09004 * 109.47347 * 179.97438 * 14 13 12 29 29 H 1.09008 * 109.47333 * 179.97438 * 15 14 13 30 30 H 1.09000 * 109.47479 * 60.00161 * 15 14 13 31 31 H 1.09001 * 109.47451 * 300.00237 * 16 3 2 32 32 H 1.09002 * 109.47059 * 60.00016 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4536 2.1827 1.1745 5 1 0.8814 3.0844 1.0135 6 6 1.6524 1.7118 2.4550 7 7 2.4501 0.6871 2.6624 8 14 0.7886 2.5296 3.8955 9 1 -0.6815 2.4423 3.7052 10 1 1.1662 1.8400 5.1553 11 1 1.1942 3.9561 3.9707 12 6 3.5663 1.4440 0.1068 13 6 4.0763 2.8864 0.1062 14 6 3.6554 3.5755 -1.1934 15 6 2.1291 3.5742 -1.3002 16 6 1.6191 2.1323 -1.2992 17 1 -0.3633 0.4693 -0.9143 18 1 -0.3632 -1.0264 0.0507 19 1 -0.3633 0.5571 0.8636 20 1 1.8935 -0.5138 -0.8899 21 1 1.8934 -0.5137 0.8900 22 1 2.5897 0.3556 3.5633 23 1 3.8662 0.9526 1.0324 24 1 3.9904 0.9087 -0.7426 25 1 5.1636 2.8874 0.1827 26 1 3.6521 3.4222 0.9554 27 1 4.0795 3.0398 -2.0426 28 1 4.0183 4.6034 -1.1937 29 1 1.8292 4.0656 -2.2258 30 1 1.7049 4.1100 -0.4510 31 1 2.0432 1.5970 -2.1487 32 1 0.5317 2.1313 -1.3753 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261046448.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:47 Heat of formation + Delta-G solvation = -34.062781 kcal Electronic energy + Delta-G solvation = -12044.962293 eV Core-core repulsion = 10197.099354 eV Total energy + Delta-G solvation = -1847.862939 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.02555 -33.32235 -31.36269 -29.38853 -27.84056 -24.89447 -22.50760 -21.21822 -19.35548 -18.48901 -15.34186 -14.75030 -14.20166 -13.44575 -13.11103 -12.81437 -12.32890 -12.06751 -11.51420 -11.27054 -10.86992 -10.78689 -10.55366 -10.39825 -10.22956 -9.95647 -9.79926 -9.57585 -9.37683 -8.74727 -8.62569 -8.33118 -8.13171 -5.85087 -3.90295 3.34949 3.40382 3.43461 4.50011 5.39751 5.81875 5.90160 5.93162 6.41037 6.46295 6.53257 6.57445 6.65117 6.73005 6.76714 6.82420 6.91750 6.98314 7.07834 7.15677 7.26714 7.34363 7.58498 7.60753 7.66061 7.86047 7.89247 8.13218 8.35569 8.63741 9.07929 9.70802 11.15840 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.036430 B = 0.019695 C = 0.016702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.413308 B = 1421.375351 C = 1676.024728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.108 4.108 3 C 0.073 3.927 4 C -0.486 4.486 5 H 0.052 0.948 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.878 3.122 9 H -0.279 1.279 10 H -0.290 1.290 11 H -0.280 1.280 12 C -0.103 4.103 13 C -0.103 4.103 14 C -0.111 4.111 15 C -0.109 4.109 16 C -0.103 4.103 17 H 0.030 0.970 18 H 0.019 0.981 19 H 0.063 0.937 20 H 0.011 0.989 21 H 0.085 0.915 22 H 0.257 0.743 23 H 0.091 0.909 24 H 0.010 0.990 25 H 0.028 0.972 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.039 0.961 29 H 0.032 0.968 30 H 0.067 0.933 31 H 0.030 0.970 32 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.097 1.940 -4.262 4.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.146 4.146 3 C 0.073 3.927 4 C -0.525 4.525 5 H 0.071 0.929 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.707 3.293 9 H -0.205 1.205 10 H -0.215 1.215 11 H -0.206 1.206 12 C -0.141 4.141 13 C -0.140 4.140 14 C -0.148 4.148 15 C -0.146 4.146 16 C -0.140 4.140 17 H 0.049 0.951 18 H 0.038 0.962 19 H 0.082 0.918 20 H 0.030 0.970 21 H 0.104 0.896 22 H 0.067 0.933 23 H 0.109 0.891 24 H 0.029 0.971 25 H 0.047 0.953 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.167 1.826 -4.102 4.494 hybrid contribution -0.471 0.450 0.818 1.046 sum -0.305 2.276 -3.285 4.008 Atomic orbital electron populations 1.21650 0.98192 0.97993 1.00968 1.21480 0.94105 0.99224 0.99752 1.18110 0.91730 0.91634 0.91219 1.20994 1.31747 1.09312 0.90414 0.92941 1.24853 0.95152 0.95194 0.98285 1.69797 1.36308 1.25658 1.20806 0.86883 0.80350 0.79584 0.82502 1.20514 1.21541 1.20570 1.21554 0.97834 0.94092 1.00602 1.21367 0.97052 0.98595 0.97023 1.21468 0.96441 0.98450 0.98455 1.21426 0.95443 0.98117 0.99638 1.21597 0.98944 0.94863 0.98618 0.95090 0.96228 0.91782 0.97005 0.89636 0.93281 0.89108 0.97101 0.95296 0.91261 0.93857 0.94218 0.94948 0.91447 0.95166 0.93535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.33 37.16 0.35 -2.51 16 2 C -0.11 -2.54 4.68 -26.73 -0.13 -2.67 16 3 C 0.07 1.74 0.28 -155.66 -0.04 1.69 16 4 C -0.49 -12.48 4.63 -34.44 -0.16 -12.64 16 5 H 0.05 1.37 6.61 -52.49 -0.35 1.02 16 6 C 0.07 1.72 5.05 -17.82 -0.09 1.63 16 7 N -0.89 -23.98 9.44 55.43 0.52 -23.46 16 8 Si 0.88 20.87 29.54 -169.99 -5.02 15.84 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 12 C -0.10 -2.43 4.54 -26.73 -0.12 -2.55 16 13 C -0.10 -2.21 5.70 -26.73 -0.15 -2.36 16 14 C -0.11 -2.11 5.92 -26.73 -0.16 -2.27 16 15 C -0.11 -2.15 5.69 -26.76 -0.15 -2.30 16 16 C -0.10 -2.19 4.43 -26.76 -0.12 -2.30 16 17 H 0.03 0.62 6.68 -51.93 -0.35 0.27 16 18 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 19 H 0.06 1.51 6.92 -51.93 -0.36 1.15 16 20 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 21 H 0.09 2.23 6.23 -51.93 -0.32 1.90 16 22 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 23 H 0.09 2.37 6.06 -51.93 -0.31 2.06 16 24 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 1.63 7.22 -51.93 -0.37 1.25 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 30 H 0.07 1.42 6.56 -51.93 -0.34 1.08 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.98 6.60 -51.93 -0.34 0.64 16 LS Contribution 236.91 15.07 3.57 3.57 Total: -1.00 -25.82 236.91 -6.97 -32.80 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -5.27 Total: -2.48 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: -0.78 Total: -26.27 kcal Atomic # 7 Polarization: -23.98 SS G_CDS: 0.52 Total: -23.46 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -25.82 -6.97 -32.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261046448.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.267 kcal (2) G-P(sol) polarization free energy of solvation -25.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds