Wall clock time and date at job start Mon Mar 30 2020 02:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99950 * 2 1 4 4 H 1.48494 * 109.47367 * 180.02562 * 3 2 1 5 5 H 1.48512 * 109.47200 * 300.00169 * 3 2 1 6 6 H 1.48503 * 109.47406 * 60.00024 * 3 2 1 7 7 C 1.37873 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99641 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00194 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46914 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47050 * 54.99940 * 10 9 7 12 12 O 1.42895 * 109.47000 * 294.99704 * 10 9 7 13 13 C 1.50699 * 109.46866 * 174.99892 * 10 9 7 14 14 N 1.30254 * 125.61893 * 254.99925 * 13 10 9 15 15 C 1.34483 * 108.70382 * 179.97438 * 14 13 10 16 16 C 1.34328 * 107.66513 * 359.97438 * 15 14 13 17 17 O 1.33966 * 125.62341 * 74.69280 * 13 10 9 18 18 H 0.97003 * 120.00488 * 359.97438 * 1 2 3 19 19 H 1.08995 * 109.47549 * 60.00240 * 9 7 2 20 20 H 1.09000 * 109.46862 * 299.99921 * 9 7 2 21 21 H 0.96698 * 114.00355 * 299.99879 * 12 10 9 22 22 H 1.07993 * 126.16875 * 179.97438 * 15 14 13 23 23 H 1.07996 * 126.44422 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 1 2.9301 -3.5555 0.8395 12 8 2.9866 -3.6535 -1.2234 13 6 1.4960 -4.9637 0.1220 14 7 1.4245 -5.6987 1.1950 15 6 0.6713 -6.7802 0.9275 16 6 0.2741 -6.6938 -0.3528 17 8 0.7890 -5.5527 -0.8515 18 1 -0.4851 0.8400 0.0004 19 1 0.6240 -2.5568 -0.8902 20 1 0.6247 -2.5570 0.8897 21 1 2.4400 -3.7447 -2.0159 22 1 0.4294 -7.5750 1.6175 23 1 -0.3441 -7.4037 -0.8821 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261109381.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:01 Heat of formation + Delta-G solvation = -62.386927 kcal Electronic energy + Delta-G solvation = -10746.984611 eV Core-core repulsion = 8560.801345 eV Total energy + Delta-G solvation = -2186.183266 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -44.28128 -38.48335 -35.75218 -35.04624 -32.41027 -30.45489 -27.04714 -24.00644 -23.50627 -22.10174 -19.27874 -18.27992 -17.57528 -17.14243 -16.56660 -16.31714 -15.51292 -15.10765 -14.33787 -14.05131 -13.24273 -12.84813 -12.82613 -12.57815 -12.33998 -12.13249 -11.62251 -11.35198 -11.13061 -10.62581 -9.80182 -8.23289 -6.33965 0.48907 1.42761 1.43329 1.57430 1.70686 1.82436 2.41765 3.03313 3.11406 3.57490 4.04822 4.17611 4.39691 4.49283 4.79434 4.95762 5.26184 5.29842 5.41847 5.72397 6.10424 6.63264 6.77497 6.81294 7.35025 8.89052 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.080029 B = 0.009963 C = 0.009574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.789422 B = 2809.693277 C = 2923.990808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.970 3.030 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.530 4.530 8 H 0.067 0.933 9 C 0.009 3.991 10 C 0.220 3.780 11 H 0.125 0.875 12 O -0.549 6.549 13 C 0.155 3.845 14 N -0.513 5.513 15 C -0.066 4.066 16 C -0.071 4.071 17 O -0.212 6.212 18 H 0.265 0.735 19 H 0.008 0.992 20 H 0.003 0.997 21 H 0.387 0.613 22 H 0.217 0.783 23 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.549 -10.725 -1.866 10.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.794 3.206 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.568 4.568 8 H 0.085 0.915 9 C -0.029 4.029 10 C 0.159 3.841 11 H 0.143 0.857 12 O -0.354 6.354 13 C -0.052 4.052 14 N -0.245 5.245 15 C -0.204 4.204 16 C -0.141 4.141 17 O -0.098 6.098 18 H 0.074 0.926 19 H 0.026 0.974 20 H 0.022 0.978 21 H 0.236 0.764 22 H 0.234 0.766 23 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 1.211 -10.368 -0.959 10.483 hybrid contribution -0.886 0.476 -0.774 1.269 sum 0.325 -9.892 -1.734 10.048 Atomic orbital electron populations 1.70098 1.07795 1.27938 1.51441 1.25947 0.95752 1.03379 0.94533 0.85321 0.79078 0.78438 0.77747 1.18575 1.20287 1.20438 1.21424 0.93703 0.90979 1.50721 0.91512 1.19622 0.94102 0.92712 0.96494 1.20415 0.91881 0.82825 0.88931 0.85705 1.86504 1.37452 1.95711 1.15727 1.27769 0.96252 0.98798 0.82368 1.70380 1.20522 1.05944 1.27637 1.24018 1.00418 0.98649 0.97305 1.26052 1.02931 0.88728 0.96351 1.84431 1.51627 1.31996 1.41776 0.92629 0.97361 0.97847 0.76393 0.76640 0.71989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.04 13.29 21.45 0.28 -55.76 14 2 C 0.00 0.11 5.46 84.65 0.46 0.57 14 3 Si 0.97 44.11 29.54 68.60 2.03 46.14 14 4 H -0.26 -11.44 7.11 99.48 0.71 -10.74 14 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 14 6 H -0.28 -12.37 7.11 99.48 0.71 -11.67 14 7 C -0.53 -29.82 8.88 25.60 0.23 -29.60 14 8 H 0.07 3.67 7.74 -2.91 -0.02 3.64 14 9 C 0.01 0.46 4.64 29.85 0.14 0.60 14 10 C 0.22 9.57 3.46 29.85 0.10 9.67 14 11 H 0.13 5.46 8.14 -2.39 -0.02 5.44 14 12 O -0.55 -22.22 13.08 -148.60 -1.94 -24.16 14 13 C 0.16 6.20 7.19 88.34 0.64 6.84 14 14 N -0.51 -19.77 11.29 -303.84 -3.43 -23.20 14 15 C -0.07 -1.87 11.89 83.39 0.99 -0.88 14 16 C -0.07 -1.80 12.18 66.93 0.81 -0.99 14 17 O -0.21 -7.40 10.76 -3.31 -0.04 -7.43 14 18 H 0.26 14.91 8.31 -92.71 -0.77 14.14 14 19 H 0.01 0.45 8.14 -2.39 -0.02 0.43 14 20 H 0.00 0.19 8.14 -2.39 -0.02 0.17 14 21 H 0.39 13.26 9.02 -74.06 -0.67 12.59 14 22 H 0.22 4.15 8.06 -2.91 -0.02 4.12 14 23 H 0.26 3.36 8.06 -2.91 -0.02 3.34 14 Total: -1.00 -69.10 218.59 0.83 -68.28 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 0.55 Total: 9.92 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 3.37 Total: -13.79 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -3.15 Total: -78.96 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -1.98 Total: -31.59 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -69.10 0.83 -68.28 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261109381.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.890 kcal (2) G-P(sol) polarization free energy of solvation -69.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds