Wall clock time and date at job start Mon Mar 30 2020 02:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 C 1.52999 * 109.47522 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.46822 * 305.00044 * 10 9 7 12 12 O 1.42904 * 109.47035 * 65.00135 * 10 9 7 13 13 C 1.50701 * 109.47142 * 185.00261 * 10 9 7 14 14 N 1.30251 * 125.61628 * 284.69204 * 13 10 9 15 15 C 1.34479 * 108.69917 * 179.84057 * 14 13 10 16 16 C 1.34328 * 107.66930 * 0.42222 * 15 14 13 17 17 O 1.33963 * 125.61843 * 105.00134 * 13 10 9 18 18 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 20 20 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 21 21 H 0.96701 * 113.99979 * 60.00348 * 12 10 9 22 22 H 1.08005 * 126.16867 * 180.16920 * 15 14 13 23 23 H 1.07994 * 126.44826 * 179.77009 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 6 4.0215 -2.6365 -0.0183 11 1 3.5904 -3.1779 0.8238 12 8 3.6384 -3.2719 -1.2396 13 6 5.5239 -2.6386 0.0992 14 7 6.3598 -2.3386 -0.8536 15 6 7.6129 -2.4482 -0.3782 16 6 7.5297 -2.8371 0.9048 17 8 6.2200 -2.9550 1.1992 18 1 -0.4850 0.8400 0.0004 19 1 3.8711 -0.6780 -0.9023 20 1 3.8785 -0.6824 0.8776 21 1 3.9873 -2.8425 -2.0327 22 1 8.5225 -2.2617 -0.9299 23 1 8.3568 -3.0204 1.5746 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261109383.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:02 Heat of formation + Delta-G solvation = -31.098422 kcal Electronic energy + Delta-G solvation = -10784.363852 eV Core-core repulsion = 8599.537358 eV Total energy + Delta-G solvation = -2184.826494 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -43.04827 -36.94791 -34.38106 -32.87858 -30.96766 -29.21179 -25.42635 -22.37188 -21.85315 -20.47679 -17.87538 -16.65499 -16.29287 -15.76415 -15.15979 -14.28379 -13.93716 -13.66162 -12.94895 -12.44507 -11.61791 -11.34258 -11.05711 -10.89225 -10.54218 -10.34042 -9.86564 -9.64253 -9.29350 -8.61121 -8.59924 -6.08494 -4.08125 1.68507 2.92014 2.99529 3.27761 3.35996 3.39703 4.34462 4.40693 5.02768 5.12609 5.20307 5.27408 5.80973 5.93713 6.11700 6.15091 6.48507 6.88321 7.11200 7.62927 7.96022 8.20089 8.45335 8.98270 9.51316 11.04266 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.058280 B = 0.011851 C = 0.010777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.327719 B = 2362.138837 C = 2597.433533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.266 1.266 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.082 0.918 9 C -0.032 4.032 10 C 0.214 3.786 11 H 0.121 0.879 12 O -0.532 6.532 13 C 0.181 3.819 14 N -0.491 5.491 15 C -0.045 4.045 16 C -0.094 4.094 17 O -0.201 6.201 18 H 0.265 0.735 19 H 0.031 0.969 20 H 0.024 0.976 21 H 0.380 0.620 22 H 0.180 0.820 23 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.497 -3.296 1.143 13.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.190 1.190 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.100 0.900 9 C -0.070 4.070 10 C 0.153 3.847 11 H 0.138 0.862 12 O -0.336 6.336 13 C -0.026 4.026 14 N -0.221 5.221 15 C -0.183 4.183 16 C -0.164 4.164 17 O -0.087 6.087 18 H 0.074 0.926 19 H 0.050 0.950 20 H 0.042 0.958 21 H 0.228 0.772 22 H 0.197 0.803 23 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 12.804 -3.427 0.972 13.291 hybrid contribution 1.293 1.200 0.366 1.801 sum 14.097 -2.227 1.338 14.334 Atomic orbital electron populations 1.69894 1.06180 1.26980 1.50490 1.24946 0.94730 0.98922 0.94484 0.86856 0.80447 0.83893 0.78587 1.20229 1.19034 1.21126 1.20895 0.88011 0.95106 1.51372 0.89987 1.20257 0.98666 0.90022 0.98053 1.20500 0.76913 0.98123 0.89174 0.86158 1.86566 1.75201 1.56683 1.15169 1.28453 0.99104 0.95788 0.79279 1.70355 1.00267 1.20087 1.31398 1.23332 0.96261 1.04909 0.93807 1.24952 0.84117 1.08333 0.99036 1.84483 1.17809 1.66519 1.39886 0.92559 0.95047 0.95785 0.77217 0.80304 0.77256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.96 55.43 0.77 -26.59 14 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 14 3 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 14 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 14 5 H -0.27 -6.37 6.54 56.52 0.37 -6.00 14 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 14 7 C -0.52 -14.45 9.43 -34.44 -0.32 -14.78 14 8 H 0.08 2.49 7.99 -52.49 -0.42 2.07 14 9 C -0.03 -0.75 3.70 -27.88 -0.10 -0.86 14 10 C 0.21 4.39 3.46 -27.88 -0.10 4.29 14 11 H 0.12 2.39 8.14 -51.93 -0.42 1.96 14 12 O -0.53 -10.91 13.08 -35.23 -0.46 -11.37 14 13 C 0.18 3.43 7.22 -12.95 -0.09 3.34 14 14 N -0.49 -9.02 11.17 -11.10 -0.12 -9.14 14 15 C -0.04 -0.65 11.89 -17.77 -0.21 -0.86 14 16 C -0.09 -1.24 12.18 29.35 0.36 -0.88 14 17 O -0.20 -3.42 10.78 5.36 0.06 -3.37 14 18 H 0.26 7.54 8.31 -40.82 -0.34 7.20 14 19 H 0.03 0.75 7.20 -51.93 -0.37 0.38 14 20 H 0.02 0.56 7.57 -51.93 -0.39 0.17 14 21 H 0.38 6.89 8.93 45.56 0.41 7.30 14 22 H 0.18 1.90 8.06 -52.48 -0.42 1.47 14 23 H 0.21 1.69 8.06 -52.49 -0.42 1.27 14 LS Contribution 214.81 15.07 3.24 3.24 Total: -1.00 -32.19 214.81 -2.97 -35.16 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -1.21 Total: 3.01 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -0.57 Total: -7.79 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.65 Total: -35.73 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.40 Total: -14.74 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -32.19 -2.97 -35.16 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261109383.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.066 kcal (2) G-P(sol) polarization free energy of solvation -32.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds