Wall clock time and date at job start Mon Mar 30 2020 02:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47152 * 2 1 4 4 H 1.09001 * 110.43334 * 52.45954 * 3 2 1 5 5 C 1.54888 * 110.48770 * 289.77771 * 3 2 1 6 6 C 1.54891 * 102.75120 * 203.38058 * 5 3 2 7 7 C 1.54267 * 104.19324 * 37.94011 * 6 5 3 8 8 H 1.08998 * 110.03405 * 95.67701 * 7 6 5 9 9 C 1.52999 * 110.03137 * 217.10706 * 7 6 5 10 10 C 1.50698 * 109.47342 * 292.16712 * 9 7 6 11 11 H 1.08003 * 120.00024 * 0.02562 * 10 9 7 12 12 C 1.37870 * 120.00366 * 179.97438 * 10 9 7 13 13 N 1.31519 * 120.00184 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 120.00261 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47279 * 89.99859 * 14 12 10 16 16 H 1.48501 * 109.46979 * 210.00414 * 14 12 10 17 17 H 1.48505 * 109.46596 * 329.99683 * 14 12 10 18 18 C 1.53876 * 106.59870 * 336.39035 * 7 6 5 19 19 H 1.09004 * 109.46817 * 299.99653 * 1 2 3 20 20 H 1.08992 * 109.47315 * 59.99710 * 1 2 3 21 21 H 1.09000 * 109.47415 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46687 * 239.99821 * 2 1 3 23 23 H 1.08999 * 109.47009 * 120.00490 * 2 1 3 24 24 H 1.09005 * 110.75648 * 321.69288 * 5 3 2 25 25 H 1.08999 * 110.75852 * 85.06219 * 5 3 2 26 26 H 1.09004 * 110.48613 * 279.26383 * 6 5 3 27 27 H 1.08994 * 110.48745 * 156.61801 * 6 5 3 28 28 H 1.08998 * 109.47264 * 52.16842 * 9 7 6 29 29 H 1.08998 * 109.47519 * 172.16841 * 9 7 6 30 30 H 0.97000 * 119.99966 * 180.02562 * 13 12 10 31 31 H 1.08998 * 110.02768 * 119.28860 * 18 7 6 32 32 H 1.08994 * 110.03051 * 240.71540 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5801 2.0087 0.8099 5 6 1.7579 2.1172 -1.3653 6 6 2.8153 3.2480 -1.4128 7 6 4.0702 2.6196 -0.7724 8 1 4.7298 2.2301 -1.5477 9 6 4.8079 3.6633 0.0686 10 6 5.3905 4.7176 -0.8370 11 1 5.2484 4.6502 -1.9055 12 6 6.1040 5.7687 -0.3015 13 7 6.2768 5.8512 0.9997 14 14 6.8256 7.0760 -1.4241 15 1 5.8366 8.1677 -1.6121 16 1 8.0611 7.6272 -0.8117 17 1 7.1527 6.4721 -2.7407 18 6 3.5772 1.4716 0.1259 19 1 -0.3633 0.5138 0.8901 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 1.9090 1.4125 -2.1831 25 1 0.7494 2.5300 -1.3912 26 1 2.4807 4.1078 -0.8324 27 1 3.0177 3.5379 -2.4438 28 1 4.1102 4.1279 0.7652 29 1 5.6101 3.1798 0.6261 30 1 6.7785 6.5909 1.3764 31 1 3.9977 0.5250 -0.2135 32 1 3.8636 1.6581 1.1609 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261116783.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:33 Heat of formation + Delta-G solvation = -46.337855 kcal Electronic energy + Delta-G solvation = -11107.575447 eV Core-core repulsion = 9259.180221 eV Total energy + Delta-G solvation = -1848.395226 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.17569 -33.83756 -32.24778 -29.29466 -27.97827 -25.49797 -22.42483 -22.01978 -19.56189 -18.52929 -16.29274 -14.93345 -14.51540 -14.39128 -13.90110 -12.90589 -12.67062 -12.47598 -12.10268 -11.75162 -11.32069 -11.05720 -10.90054 -10.68030 -10.35744 -10.23951 -10.10595 -9.99406 -9.98593 -9.44176 -9.00240 -8.85184 -8.28062 -5.93519 -3.94869 3.35105 3.41209 3.44741 4.50954 5.03322 5.11527 5.23512 5.41793 5.49341 5.63890 5.66483 5.96580 6.06068 6.09210 6.14051 6.20840 6.31321 6.38237 6.44288 6.56389 6.59060 6.74069 6.89958 7.05816 7.15251 7.35240 7.75866 7.93086 8.07769 8.52002 9.12344 9.68641 11.17850 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.088725 B = 0.008492 C = 0.008117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 315.506529 B = 3296.490909 C = 3448.664629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.093 4.093 4 H 0.069 0.931 5 C -0.121 4.121 6 C -0.106 4.106 7 C -0.086 4.086 8 H 0.054 0.946 9 C 0.029 3.971 10 C -0.513 4.513 11 H 0.054 0.946 12 C 0.054 3.946 13 N -0.898 5.898 14 Si 0.889 3.111 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.117 4.117 19 H 0.051 0.949 20 H 0.054 0.946 21 H 0.047 0.953 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.016 0.984 29 H 0.013 0.987 30 H 0.259 0.741 31 H 0.050 0.950 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.648 -8.555 -2.532 12.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.111 4.111 4 H 0.087 0.913 5 C -0.158 4.158 6 C -0.143 4.143 7 C -0.104 4.104 8 H 0.073 0.927 9 C -0.008 4.008 10 C -0.552 4.552 11 H 0.072 0.928 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.717 3.283 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.155 4.155 19 H 0.070 0.930 20 H 0.073 0.927 21 H 0.066 0.934 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.034 0.966 29 H 0.031 0.969 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.556 -8.449 -2.396 12.261 hybrid contribution 0.497 0.832 -0.517 1.098 sum -8.059 -7.618 -2.913 11.466 Atomic orbital electron populations 1.21783 0.96450 1.00811 1.01766 1.21576 0.95317 0.97023 1.01413 1.22019 0.96463 0.94798 0.97835 0.91267 1.22603 0.98615 0.98094 0.96494 1.22295 0.94649 0.97099 1.00284 1.21807 0.96016 0.95301 0.97293 0.92737 1.19221 0.94678 0.92368 0.94562 1.21288 1.32694 1.07742 0.93440 0.92767 1.25030 0.96519 0.98120 0.94920 1.69971 1.41650 1.31626 1.10522 0.86644 0.78634 0.82081 0.80938 1.20752 1.21313 1.19946 1.22334 0.93954 0.98597 1.00598 0.92967 0.92737 0.93431 0.92310 0.92470 0.92396 0.92750 0.91573 0.92765 0.96584 0.96874 0.93138 0.93131 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.79 37.16 0.36 -1.31 16 2 C -0.12 -1.47 5.28 -26.73 -0.14 -1.62 16 3 C -0.09 -1.43 2.85 -88.97 -0.25 -1.69 16 4 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 5 C -0.12 -1.88 5.67 -24.74 -0.14 -2.02 16 6 C -0.11 -2.04 5.91 -25.07 -0.15 -2.19 16 7 C -0.09 -1.82 2.87 -89.50 -0.26 -2.08 16 8 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 9 C 0.03 0.76 4.10 -27.88 -0.11 0.64 16 10 C -0.51 -14.73 8.68 -34.44 -0.30 -15.03 16 11 H 0.05 1.52 7.72 -52.48 -0.40 1.11 16 12 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 13 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 14 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 17 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 18 C -0.12 -2.11 6.03 -25.61 -0.15 -2.26 16 19 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 20 H 0.05 0.60 7.55 -51.93 -0.39 0.20 16 21 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.06 0.73 8.02 -51.93 -0.42 0.32 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.85 7.97 -51.93 -0.41 0.43 16 25 H 0.05 0.77 8.06 -51.93 -0.42 0.36 16 26 H 0.07 1.38 7.76 -51.93 -0.40 0.97 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.02 0.45 8.00 -51.93 -0.42 0.03 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.05 0.83 7.84 -51.93 -0.41 0.43 16 32 H 0.06 1.13 7.67 -51.93 -0.40 0.73 16 LS Contribution 256.69 15.07 3.87 3.87 Total: -1.00 -29.70 256.69 -7.42 -37.13 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: -5.76 Total: -5.21 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: -1.24 Total: -26.04 kcal Atomic # 7 Polarization: -27.50 SS G_CDS: 0.74 Total: -26.76 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.70 -7.42 -37.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261116783.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.212 kcal (2) G-P(sol) polarization free energy of solvation -29.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds