Wall clock time and date at job start Mon Mar 30 2020 02:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47152 * 2 1 4 4 H 1.09001 * 110.43334 * 52.45954 * 3 2 1 5 5 C 1.54888 * 110.48770 * 289.77771 * 3 2 1 6 6 C 1.54891 * 102.75120 * 203.38058 * 5 3 2 7 7 C 1.54267 * 104.19324 * 37.94011 * 6 5 3 8 8 H 1.08998 * 110.03405 * 95.67701 * 7 6 5 9 9 C 1.52999 * 110.03137 * 217.10706 * 7 6 5 10 10 C 1.50698 * 109.47342 * 292.16712 * 9 7 6 11 11 H 1.08003 * 120.00024 * 0.02562 * 10 9 7 12 12 C 1.37870 * 120.00366 * 179.97438 * 10 9 7 13 13 N 1.31519 * 120.00184 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 120.00261 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47279 * 89.99859 * 14 12 10 16 16 H 1.48501 * 109.46979 * 210.00414 * 14 12 10 17 17 H 1.48505 * 109.46596 * 329.99683 * 14 12 10 18 18 C 1.53876 * 106.59870 * 336.39035 * 7 6 5 19 19 H 1.09004 * 109.46817 * 299.99653 * 1 2 3 20 20 H 1.08992 * 109.47315 * 59.99710 * 1 2 3 21 21 H 1.09000 * 109.47415 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46687 * 239.99821 * 2 1 3 23 23 H 1.08999 * 109.47009 * 120.00490 * 2 1 3 24 24 H 1.09005 * 110.75648 * 321.69288 * 5 3 2 25 25 H 1.08999 * 110.75852 * 85.06219 * 5 3 2 26 26 H 1.09004 * 110.48613 * 279.26383 * 6 5 3 27 27 H 1.08994 * 110.48745 * 156.61801 * 6 5 3 28 28 H 1.08998 * 109.47264 * 52.16842 * 9 7 6 29 29 H 1.08998 * 109.47519 * 172.16841 * 9 7 6 30 30 H 0.97000 * 119.99966 * 180.02562 * 13 12 10 31 31 H 1.08998 * 110.02768 * 119.28860 * 18 7 6 32 32 H 1.08994 * 110.03051 * 240.71540 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5801 2.0087 0.8099 5 6 1.7579 2.1172 -1.3653 6 6 2.8153 3.2480 -1.4128 7 6 4.0702 2.6196 -0.7724 8 1 4.7298 2.2301 -1.5477 9 6 4.8079 3.6633 0.0686 10 6 5.3905 4.7176 -0.8370 11 1 5.2484 4.6502 -1.9055 12 6 6.1040 5.7687 -0.3015 13 7 6.2768 5.8512 0.9997 14 14 6.8256 7.0760 -1.4241 15 1 5.8366 8.1677 -1.6121 16 1 8.0611 7.6272 -0.8117 17 1 7.1527 6.4721 -2.7407 18 6 3.5772 1.4716 0.1259 19 1 -0.3633 0.5138 0.8901 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 1.9090 1.4125 -2.1831 25 1 0.7494 2.5300 -1.3912 26 1 2.4807 4.1078 -0.8324 27 1 3.0177 3.5379 -2.4438 28 1 4.1102 4.1279 0.7652 29 1 5.6101 3.1798 0.6261 30 1 6.7785 6.5909 1.3764 31 1 3.9977 0.5250 -0.2135 32 1 3.8636 1.6581 1.1609 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261116783.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:33 Heat of formation + Delta-G solvation = -62.230765 kcal Electronic energy + Delta-G solvation = -11108.264616 eV Core-core repulsion = 9259.180221 eV Total energy + Delta-G solvation = -1849.084394 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.62498 -35.57445 -33.99613 -30.99449 -29.40363 -27.28612 -24.19459 -23.36183 -20.88966 -20.14585 -18.50401 -16.67235 -16.06486 -15.89601 -15.12919 -14.36903 -14.24546 -14.06454 -13.81098 -13.18049 -12.91865 -12.69244 -12.67485 -12.20134 -11.93000 -11.92130 -11.52197 -11.37562 -11.27827 -11.08704 -11.00630 -10.75879 -10.52716 -8.18612 -6.29041 1.38396 1.40067 1.51092 2.40974 3.13956 3.78882 3.90702 3.93408 4.35932 4.45878 4.56482 4.67840 4.75352 4.82884 4.89886 4.98834 5.02177 5.12560 5.18146 5.20582 5.32084 5.37466 5.41292 5.47549 5.54750 5.62637 5.67717 5.82758 5.90161 6.29313 6.87694 7.39797 8.93363 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.088725 B = 0.008492 C = 0.008117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 315.506529 B = 3296.490909 C = 3448.664629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.089 4.089 4 H 0.061 0.939 5 C -0.108 4.108 6 C -0.106 4.106 7 C -0.085 4.085 8 H 0.051 0.949 9 C 0.035 3.965 10 C -0.532 4.532 11 H 0.059 0.941 12 C -0.004 4.004 13 N -0.937 5.937 14 Si 0.964 3.036 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.263 1.263 18 C -0.115 4.115 19 H 0.050 0.950 20 H 0.057 0.943 21 H 0.063 0.937 22 H 0.067 0.933 23 H 0.060 0.940 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.054 0.946 28 H -0.013 1.013 29 H -0.018 1.018 30 H 0.262 0.738 31 H 0.069 0.931 32 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.604 -9.231 -4.008 13.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.107 4.107 4 H 0.079 0.921 5 C -0.145 4.145 6 C -0.144 4.144 7 C -0.104 4.104 8 H 0.069 0.931 9 C -0.002 4.002 10 C -0.570 4.570 11 H 0.077 0.923 12 C -0.201 4.201 13 N -0.578 5.578 14 Si 0.788 3.212 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.187 1.187 18 C -0.152 4.152 19 H 0.069 0.931 20 H 0.076 0.924 21 H 0.082 0.918 22 H 0.085 0.915 23 H 0.079 0.921 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.006 0.994 29 H 0.001 0.999 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.523 -9.138 -3.879 13.757 hybrid contribution 0.824 1.044 -0.012 1.330 sum -8.699 -8.094 -3.891 12.503 Atomic orbital electron populations 1.21766 0.94943 1.02006 1.01902 1.21531 0.96578 0.94666 1.02063 1.21991 0.94188 0.96945 0.97598 0.92085 1.22542 0.98132 0.96773 0.97034 1.22235 0.94962 0.97700 0.99491 1.21726 0.96482 0.95111 0.97046 0.93070 1.19107 0.93515 0.93263 0.94331 1.21679 1.32905 1.08527 0.93918 0.92317 1.26004 0.96902 1.00688 0.96533 1.70112 1.42456 1.32626 1.12584 0.85471 0.77859 0.78891 0.78979 1.19764 1.20768 1.18741 1.22286 0.96274 0.97915 0.98763 0.93096 0.92392 0.91754 0.91451 0.92103 0.90560 0.90851 0.93921 0.92682 0.99430 0.99926 0.92894 0.91265 0.93928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.79 71.98 0.70 -2.10 16 2 C -0.11 -2.50 5.28 30.59 0.16 -2.33 16 3 C -0.09 -2.59 2.85 -9.72 -0.03 -2.62 16 4 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 5 C -0.11 -3.09 5.67 31.89 0.18 -2.91 16 6 C -0.11 -4.05 5.91 31.67 0.19 -3.87 16 7 C -0.09 -3.65 2.87 -10.07 -0.03 -3.68 16 8 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 9 C 0.03 1.92 4.10 29.85 0.12 2.04 16 10 C -0.53 -31.18 8.68 25.60 0.22 -30.96 16 11 H 0.06 3.30 7.72 -2.91 -0.02 3.28 16 12 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 13 N -0.94 -58.79 13.29 21.45 0.28 -58.51 16 14 Si 0.96 45.39 29.54 68.60 2.03 47.42 16 15 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 16 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 17 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 18 C -0.11 -4.08 6.03 31.32 0.19 -3.89 16 19 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 20 H 0.06 1.06 7.55 -2.39 -0.02 1.04 16 21 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.07 1.43 8.02 -2.39 -0.02 1.41 16 23 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.08 1.95 7.97 -2.38 -0.02 1.94 16 25 H 0.07 1.87 8.06 -2.39 -0.02 1.85 16 26 H 0.04 1.80 7.76 -2.38 -0.02 1.78 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H -0.01 -0.76 8.00 -2.39 -0.02 -0.78 16 29 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 30 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 31 H 0.07 2.18 7.84 -2.39 -0.02 2.17 16 32 H 0.04 1.64 7.67 -2.39 -0.02 1.62 16 Total: -1.00 -64.57 256.69 5.53 -59.04 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: 1.04 Total: 2.15 kcal Atomic # 6 Polarization: -52.28 SS G_CDS: 2.17 Total: -50.10 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: 0.28 Total: -58.51 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -64.57 5.53 -59.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261116783.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.190 kcal (2) G-P(sol) polarization free energy of solvation -64.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds