Wall clock time and date at job start Mon Mar 30 2020 02:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47100 * 2 1 4 4 H 1.09003 * 110.53367 * 307.61249 * 3 2 1 5 5 C 1.54463 * 110.65944 * 70.23814 * 3 2 1 6 6 C 1.53877 * 106.68421 * 142.05478 * 5 3 2 7 7 C 1.54265 * 106.59605 * 0.15594 * 6 5 3 8 8 H 1.09006 * 110.48556 * 95.06998 * 7 6 5 9 9 C 1.53000 * 110.48514 * 217.71057 * 7 6 5 10 10 C 1.50696 * 109.47151 * 289.77537 * 9 7 6 11 11 H 1.08001 * 120.00600 * 0.02562 * 10 9 7 12 12 C 1.37882 * 119.99790 * 179.97438 * 10 9 7 13 13 N 1.31508 * 120.00390 * 0.02562 * 12 10 9 14 14 Si 1.86809 * 119.99869 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.46632 * 60.00378 * 14 12 10 16 16 H 1.48500 * 109.46948 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.46997 * 300.00437 * 14 12 10 18 18 C 1.54887 * 104.20056 * 336.39127 * 7 6 5 19 19 H 1.09003 * 109.47304 * 179.97438 * 1 2 3 20 20 H 1.08995 * 109.47613 * 300.00256 * 1 2 3 21 21 H 1.09004 * 109.47244 * 60.00042 * 1 2 3 22 22 H 1.09004 * 109.47595 * 239.99994 * 2 1 3 23 23 H 1.08997 * 109.47075 * 119.99613 * 2 1 3 24 24 H 1.08999 * 109.85715 * 22.81273 * 5 3 2 25 25 H 1.09003 * 110.15968 * 261.45904 * 5 3 2 26 26 H 1.08995 * 110.02951 * 240.87549 * 6 5 3 27 27 H 1.08998 * 110.07557 * 119.46051 * 6 5 3 28 28 H 1.09004 * 109.46968 * 49.77863 * 9 7 6 29 29 H 1.09008 * 109.47161 * 169.77676 * 9 7 6 30 30 H 0.96999 * 120.00384 * 179.97438 * 13 12 10 31 31 H 1.09002 * 110.75856 * 156.25785 * 18 7 6 32 32 H 1.09006 * 110.75640 * 279.44771 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5800 2.0107 -0.8086 5 6 1.7609 2.1193 1.3602 6 6 2.9786 3.0077 1.6697 7 6 3.9549 2.8449 0.4865 8 1 3.8064 3.6411 -0.2430 9 6 5.4019 2.8354 0.9837 10 6 5.7777 4.2142 1.4620 11 1 5.0566 5.0169 1.4164 12 6 7.0419 4.4507 1.9588 13 7 7.9199 3.4733 2.0149 14 14 7.5076 6.1597 2.5524 15 1 6.6053 6.5613 3.6614 16 1 8.9120 6.1505 3.0348 17 1 7.3757 7.1257 1.4323 18 6 3.5834 1.4718 -0.1265 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.6457 1.3607 2.1344 25 1 0.8597 2.7293 1.2984 26 1 3.4543 2.6802 2.5941 27 1 2.6691 4.0491 1.7578 28 1 5.4989 2.1266 1.8060 29 1 6.0639 2.5403 0.1696 30 1 8.8095 3.6398 2.3641 31 1 3.8864 1.4210 -1.1723 32 1 4.0332 0.6595 0.4444 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261116785.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:36 Heat of formation + Delta-G solvation = -62.463756 kcal Electronic energy + Delta-G solvation = -11081.763637 eV Core-core repulsion = 9232.669140 eV Total energy + Delta-G solvation = -1849.094497 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.57853 -35.58083 -34.00268 -31.02656 -29.39519 -27.28467 -24.21474 -23.35750 -20.91897 -20.01730 -18.39177 -16.85993 -16.55145 -15.43617 -15.03108 -14.47056 -14.21202 -13.94862 -13.88911 -13.26397 -12.89438 -12.73480 -12.56358 -12.26285 -12.04172 -11.82220 -11.51737 -11.36556 -11.27607 -11.19163 -10.96237 -10.73287 -10.52646 -8.18239 -6.28764 1.38529 1.41885 1.49735 2.41221 3.14138 3.78642 3.89150 3.92998 4.35905 4.44956 4.56924 4.66733 4.76348 4.81820 4.88048 4.98184 5.01880 5.13320 5.20178 5.22331 5.30465 5.35445 5.39550 5.46309 5.55687 5.60710 5.68199 5.83096 5.90049 6.29269 6.87651 7.39896 8.93467 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.091997 B = 0.008350 C = 0.007953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 304.283277 B = 3352.591473 C = 3519.721444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C -0.085 4.085 4 H 0.078 0.922 5 C -0.110 4.110 6 C -0.108 4.108 7 C -0.084 4.084 8 H 0.054 0.946 9 C 0.035 3.965 10 C -0.534 4.534 11 H 0.058 0.942 12 C -0.003 4.003 13 N -0.936 5.936 14 Si 0.963 3.037 15 H -0.267 1.267 16 H -0.283 1.283 17 H -0.267 1.267 18 C -0.115 4.115 19 H 0.061 0.939 20 H 0.055 0.945 21 H 0.057 0.943 22 H 0.063 0.937 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.039 0.961 27 H 0.051 0.949 28 H -0.012 1.012 29 H -0.016 1.016 30 H 0.263 0.737 31 H 0.060 0.940 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.142 -3.900 -2.960 14.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C -0.103 4.103 4 H 0.096 0.904 5 C -0.148 4.148 6 C -0.145 4.145 7 C -0.102 4.102 8 H 0.073 0.927 9 C -0.002 4.002 10 C -0.572 4.572 11 H 0.076 0.924 12 C -0.200 4.200 13 N -0.577 5.577 14 Si 0.788 3.212 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.192 1.192 18 C -0.152 4.152 19 H 0.080 0.920 20 H 0.074 0.926 21 H 0.076 0.924 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.006 0.994 29 H 0.002 0.998 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.980 -3.939 -2.904 13.872 hybrid contribution 0.955 0.775 0.424 1.301 sum -12.025 -3.164 -2.479 12.679 Atomic orbital electron populations 1.21753 0.94666 1.01965 1.02070 1.21542 0.96757 0.95068 1.01805 1.22028 0.94075 0.96709 0.97527 0.90369 1.22231 0.97109 0.98319 0.97099 1.22022 0.95598 0.99262 0.97660 1.21925 0.95044 0.96585 0.96658 0.92738 1.19031 0.92082 0.95254 0.93882 1.21644 0.97844 0.96726 1.40996 0.92395 1.25997 0.96636 1.01263 0.96150 1.70096 1.05868 1.34045 1.47683 0.85532 0.77215 0.79522 0.78978 1.19208 1.20811 1.19191 1.22606 0.96254 0.96563 0.99817 0.92034 0.92613 0.92382 0.91789 0.92554 0.91759 0.90818 0.94174 0.92964 0.99366 0.99757 0.92864 0.92102 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.79 71.98 0.70 -2.00 16 2 C -0.11 -2.61 5.33 30.60 0.16 -2.44 16 3 C -0.09 -2.35 2.86 -9.65 -0.03 -2.38 16 4 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 5 C -0.11 -3.19 5.72 31.39 0.18 -3.02 16 6 C -0.11 -4.13 6.03 31.32 0.19 -3.94 16 7 C -0.08 -3.59 2.81 -9.72 -0.03 -3.61 16 8 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 9 C 0.03 1.90 4.37 29.85 0.13 2.03 16 10 C -0.53 -31.29 8.77 25.60 0.22 -31.07 16 11 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 12 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 13 N -0.94 -58.65 13.29 21.45 0.28 -58.36 16 14 Si 0.96 45.34 29.54 68.60 2.03 47.37 16 15 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 16 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 C -0.11 -4.05 5.75 31.88 0.18 -3.87 16 19 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 20 H 0.05 1.01 7.63 -2.39 -0.02 0.99 16 21 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 22 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 23 H 0.06 1.34 7.96 -2.39 -0.02 1.32 16 24 H 0.06 1.77 7.71 -2.39 -0.02 1.75 16 25 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.04 1.70 7.71 -2.39 -0.02 1.68 16 27 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 28 H -0.01 -0.72 7.95 -2.39 -0.02 -0.74 16 29 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 30 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 31 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.05 1.94 7.97 -2.38 -0.02 1.92 16 Total: -1.00 -64.25 257.29 5.53 -58.72 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: 1.04 Total: 2.30 kcal Atomic # 6 Polarization: -52.21 SS G_CDS: 2.18 Total: -50.03 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: 0.28 Total: -58.36 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -64.25 5.53 -58.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261116785.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.743 kcal (2) G-P(sol) polarization free energy of solvation -64.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds