Wall clock time and date at job start Mon Mar 30 2020 02:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47315 * 2 1 4 4 H 1.09004 * 110.67016 * 56.78121 * 3 2 1 5 5 C 1.54885 * 110.75869 * 293.54690 * 3 2 1 6 6 C 1.54265 * 104.19591 * 203.74268 * 5 3 2 7 7 C 1.53873 * 106.60016 * 23.60800 * 6 5 3 8 8 H 1.08995 * 110.03059 * 240.66669 * 7 6 5 9 9 C 1.53000 * 110.03075 * 119.28057 * 7 6 5 10 10 C 1.50708 * 109.46973 * 66.45640 * 9 7 6 11 11 H 1.07991 * 119.99789 * 0.02562 * 10 9 7 12 12 C 1.37877 * 120.00008 * 179.97438 * 10 9 7 13 13 N 1.31514 * 120.00089 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99938 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 269.99556 * 14 12 10 16 16 H 1.48503 * 109.47261 * 149.99737 * 14 12 10 17 17 H 1.48500 * 109.47454 * 29.99730 * 14 12 10 18 18 C 1.54264 * 106.59663 * 0.02562 * 7 6 5 19 19 H 1.09000 * 109.47441 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.46980 * 299.99964 * 1 2 3 21 21 H 1.09001 * 109.47271 * 59.99948 * 1 2 3 22 22 H 1.09001 * 109.46980 * 240.00036 * 2 1 3 23 23 H 1.09005 * 109.46810 * 119.99909 * 2 1 3 24 24 H 1.09004 * 110.48754 * 85.06252 * 5 3 2 25 25 H 1.09006 * 110.48544 * 322.42057 * 5 3 2 26 26 H 1.08999 * 110.03301 * 264.32100 * 6 5 3 27 27 H 1.09006 * 110.03177 * 142.89239 * 6 5 3 28 28 H 1.08994 * 109.48028 * 306.45697 * 9 7 6 29 29 H 1.09000 * 109.47206 * 186.45552 * 9 7 6 30 30 H 0.96997 * 119.99848 * 180.02562 * 13 12 10 31 31 H 1.09003 * 110.49066 * 95.06633 * 18 7 6 32 32 H 1.09006 * 110.48547 * 217.71115 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6416 1.9915 0.8532 5 6 1.6776 2.1529 -1.3277 6 6 2.7189 3.2847 -1.4478 7 6 3.9340 2.8550 -0.6070 8 1 4.1109 3.5774 0.1897 9 6 5.1735 2.7425 -1.4968 10 6 5.5520 4.1094 -2.0063 11 1 4.9671 4.9721 -1.7233 12 6 6.6454 4.2587 -2.8327 13 7 6.9760 5.4517 -3.2769 14 14 7.6574 2.7667 -3.3215 15 1 8.7455 2.5607 -2.3321 16 1 8.2468 2.9873 -4.6666 17 1 6.7846 1.5657 -3.3545 18 6 3.5888 1.4769 -0.0060 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 0.6699 2.5655 -1.2769 25 1 1.7662 1.4623 -2.1664 26 1 2.3057 4.2151 -1.0585 27 1 3.0124 3.4130 -2.4897 28 1 4.9570 2.0875 -2.3406 29 1 5.9996 2.3288 -0.9184 30 1 7.7450 5.5566 -3.8586 31 1 3.9863 0.6775 -0.6313 32 1 3.9757 1.3960 1.0099 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261116786.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:38 Heat of formation + Delta-G solvation = -42.957509 kcal Electronic energy + Delta-G solvation = -11157.948632 eV Core-core repulsion = 9309.699989 eV Total energy + Delta-G solvation = -1848.248643 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.26848 -33.91959 -32.24083 -29.67291 -28.10555 -25.77967 -22.45805 -21.78996 -19.59296 -18.43011 -16.59633 -15.51672 -14.39929 -14.27000 -13.86258 -13.02908 -12.74255 -12.62738 -12.16569 -11.90975 -11.58875 -11.27067 -10.95972 -10.77988 -10.35748 -10.23679 -10.10271 -10.01089 -9.73222 -9.49563 -9.21274 -9.00215 -8.47792 -5.98714 -3.95283 3.33971 3.41202 3.45698 4.50187 4.95392 5.04159 5.16899 5.35422 5.44858 5.56819 5.59863 5.89439 5.97195 6.02642 6.09434 6.13754 6.24160 6.30080 6.34866 6.44865 6.50889 6.62407 6.84206 6.90812 6.97790 7.22847 7.37803 7.57412 7.87088 8.61885 9.07800 9.64791 11.14959 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.069758 B = 0.009507 C = 0.008943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.291428 B = 2944.363186 C = 3130.258316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.094 4.094 4 H 0.069 0.931 5 C -0.118 4.118 6 C -0.111 4.111 7 C -0.076 4.076 8 H 0.060 0.940 9 C -0.008 4.008 10 C -0.513 4.513 11 H 0.072 0.928 12 C 0.064 3.936 13 N -0.906 5.906 14 Si 0.878 3.122 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.266 1.266 18 C -0.119 4.119 19 H 0.047 0.953 20 H 0.050 0.950 21 H 0.055 0.945 22 H 0.060 0.940 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.015 0.985 29 H 0.008 0.992 30 H 0.261 0.739 31 H 0.061 0.939 32 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.823 -9.682 5.276 14.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.113 4.113 4 H 0.087 0.913 5 C -0.156 4.156 6 C -0.149 4.149 7 C -0.095 4.095 8 H 0.078 0.922 9 C -0.045 4.045 10 C -0.551 4.551 11 H 0.090 0.910 12 C -0.137 4.137 13 N -0.546 5.546 14 Si 0.706 3.294 15 H -0.204 1.204 16 H -0.215 1.215 17 H -0.190 1.190 18 C -0.156 4.156 19 H 0.066 0.934 20 H 0.069 0.931 21 H 0.074 0.926 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.034 0.966 29 H 0.027 0.973 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.692 -9.584 5.158 14.573 hybrid contribution 0.699 -0.617 -0.327 0.988 sum -8.993 -10.201 4.831 14.432 Atomic orbital electron populations 1.21778 0.96370 1.00896 1.01758 1.21532 0.95385 0.96907 1.01552 1.22169 0.96194 0.94859 0.98063 0.91273 1.22446 0.98368 0.97985 0.96771 1.22113 0.94482 0.96496 1.01781 1.21616 0.96067 0.94331 0.97486 0.92159 1.19695 0.92729 0.97628 0.94455 1.21189 1.12234 0.93090 1.28627 0.91004 1.25043 0.97263 0.95554 0.95809 1.69922 1.27706 1.22042 1.34925 0.86802 0.80697 0.84125 0.77803 1.20415 1.21506 1.19048 1.22568 0.94160 0.98880 1.00004 0.93376 0.93064 0.92611 0.92123 0.92506 0.92797 0.92204 0.93138 0.90761 0.96640 0.97350 0.92887 0.92027 0.92760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.76 37.16 0.36 -1.23 16 2 C -0.12 -1.42 5.44 -26.73 -0.15 -1.57 16 3 C -0.09 -1.36 2.93 -88.62 -0.26 -1.62 16 4 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 5 C -0.12 -1.82 5.47 -25.08 -0.14 -1.96 16 6 C -0.11 -2.11 6.05 -25.61 -0.15 -2.27 16 7 C -0.08 -1.56 2.89 -89.50 -0.26 -1.82 16 8 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 9 C -0.01 -0.19 3.20 -27.88 -0.09 -0.28 16 10 C -0.51 -14.82 8.95 -34.44 -0.31 -15.13 16 11 H 0.07 2.23 7.92 -52.49 -0.42 1.81 16 12 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 13 N -0.91 -28.41 13.96 55.43 0.77 -27.63 16 14 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 16 15 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 17 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 18 C -0.12 -1.99 5.81 -25.06 -0.15 -2.14 16 19 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 20 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 21 H 0.05 0.60 7.41 -51.93 -0.38 0.21 16 22 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.75 8.02 -51.93 -0.42 0.33 16 25 H 0.06 0.92 8.01 -51.93 -0.42 0.50 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.07 1.58 7.36 -51.93 -0.38 1.20 16 28 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 29 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 30 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 31 H 0.06 1.05 7.76 -51.93 -0.40 0.65 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 252.79 15.07 3.81 3.81 Total: -1.00 -30.05 252.79 -7.05 -37.10 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -5.73 Total: -4.60 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: -1.23 Total: -26.21 kcal Atomic # 7 Polarization: -28.41 SS G_CDS: 0.77 Total: -27.63 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.05 -7.05 -37.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261116786.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.854 kcal (2) G-P(sol) polarization free energy of solvation -30.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds