Wall clock time and date at job start Mon Mar 30 2020 01:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86811 * 119.99584 * 2 1 4 4 H 1.48498 * 109.46842 * 270.00041 * 3 2 1 5 5 H 1.48501 * 109.47073 * 30.00180 * 3 2 1 6 6 H 1.48500 * 109.46984 * 150.00307 * 3 2 1 7 7 C 1.37873 * 120.00548 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99490 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00139 * 179.97438 * 7 2 1 10 10 N 1.46902 * 109.46857 * 179.97438 * 9 7 2 11 11 C 1.47366 * 111.00055 * 170.00104 * 10 9 7 12 12 C 1.53998 * 108.19429 * 170.63911 * 11 10 9 13 13 H 1.08996 * 115.22444 * 153.91602 * 12 11 10 14 14 C 1.54272 * 110.80904 * 288.20438 * 12 11 10 15 15 C 1.54266 * 84.60648 * 79.43846 * 14 12 11 16 16 H 1.09002 * 116.04642 * 146.68309 * 15 14 12 17 17 C 1.48960 * 110.77269 * 293.23277 * 10 9 7 18 18 N 1.48567 * 110.21712 * 20.17119 * 12 11 10 19 19 H 0.96997 * 120.00323 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.46784 * 60.00796 * 9 7 2 21 21 H 1.09000 * 109.47185 * 300.00290 * 9 7 2 22 22 H 1.09006 * 109.71640 * 50.95947 * 11 10 9 23 23 H 1.09002 * 109.71923 * 290.31945 * 11 10 9 24 24 H 1.08998 * 114.00596 * 325.52533 * 14 12 11 25 25 H 1.08995 * 114.00887 * 193.35398 * 14 12 11 26 26 H 1.09004 * 110.44194 * 69.55913 * 17 10 9 27 27 H 1.09008 * 109.81717 * 308.38532 * 17 10 9 28 28 H 1.00907 * 110.99907 * 169.06180 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7001 6 1 3.5467 1.4404 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1938 -0.0011 10 7 4.0013 -2.5788 -0.0010 11 6 5.4546 -2.6252 -0.2404 12 6 5.9368 -4.0668 0.0059 13 1 6.8388 -4.3537 -0.5346 14 6 5.9137 -4.4027 1.5115 15 6 4.4007 -4.6099 1.2934 16 1 3.9306 -5.3819 1.9027 17 6 3.6599 -3.2598 1.2791 18 7 4.7943 -5.0123 -0.0815 19 1 -0.4850 0.8400 0.0004 20 1 3.8752 -0.6803 0.8889 21 1 3.8745 -0.6797 -0.8911 22 1 5.9620 -1.9455 0.4443 23 1 5.6671 -2.3371 -1.2700 24 1 6.1572 -3.5594 2.1577 25 1 6.4533 -5.3135 1.7710 26 1 2.5852 -3.4292 1.3454 27 1 3.9894 -2.6507 2.1210 28 1 5.1167 -5.9683 -0.1002 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261125292.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:16 Heat of formation + Delta-G solvation = 63.561648 kcal Electronic energy + Delta-G solvation = -11247.587259 eV Core-core repulsion = 9300.417290 eV Total energy + Delta-G solvation = -1947.169969 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.51736 -34.99076 -32.23452 -29.38310 -28.13405 -26.63232 -23.67045 -22.18094 -20.54378 -18.25807 -16.83762 -16.47790 -14.56018 -14.45811 -13.90563 -13.74414 -13.24861 -12.76977 -12.39519 -11.89165 -11.74437 -11.54198 -11.37233 -10.88867 -10.46316 -10.13408 -9.95678 -9.77793 -9.19944 -8.51890 -8.04700 -7.21469 -5.99854 -3.96643 3.31568 3.38524 3.40413 4.08658 4.46146 4.54465 4.87459 4.95211 5.30844 5.39942 5.45855 5.73721 5.77089 5.82163 5.90184 5.98650 6.22330 6.29020 6.47015 6.72188 6.86363 7.02123 7.56032 7.65093 8.02528 8.07716 8.73363 9.10803 9.62134 11.13440 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.073416 B = 0.011616 C = 0.010793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.299053 B = 2409.892977 C = 2593.750355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.874 3.126 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.505 4.505 8 H 0.082 0.918 9 C 0.157 3.843 10 N -0.501 5.501 11 C 0.069 3.931 12 C 0.039 3.961 13 H 0.092 0.908 14 C -0.198 4.198 15 C 0.038 3.962 16 H 0.092 0.908 17 C 0.084 3.916 18 N -0.621 5.621 19 H 0.263 0.737 20 H -0.014 1.014 21 H 0.024 0.976 22 H 0.029 0.971 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.033 0.967 28 H 0.323 0.677 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.937 -6.535 2.992 13.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.194 1.194 7 C -0.543 4.543 8 H 0.100 0.900 9 C 0.031 3.969 10 N -0.226 5.226 11 C -0.060 4.060 12 C -0.072 4.072 13 H 0.110 0.890 14 C -0.237 4.237 15 C -0.073 4.073 16 H 0.110 0.890 17 C -0.044 4.044 18 N -0.248 5.248 19 H 0.073 0.927 20 H 0.003 0.997 21 H 0.042 0.958 22 H 0.047 0.953 23 H 0.093 0.907 24 H 0.082 0.918 25 H 0.097 0.903 26 H 0.109 0.891 27 H 0.051 0.949 28 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 10.944 -6.337 2.026 12.807 hybrid contribution 1.581 0.970 1.371 2.307 sum 12.525 -5.367 3.397 14.044 Atomic orbital electron populations 1.69895 1.06092 1.26722 1.51384 1.24905 0.94730 0.98773 0.94996 0.86873 0.80233 0.84127 0.78574 1.20142 1.21250 1.19405 1.21041 0.88691 0.94765 1.49838 0.90044 1.20254 0.97300 0.84437 0.94914 1.62969 1.09443 1.18189 1.31986 1.22174 0.90600 0.92462 1.00793 1.23617 0.94350 0.95411 0.93796 0.89028 1.25211 0.98288 1.01805 0.98388 1.23739 0.93661 0.98711 0.91170 0.89009 1.22350 1.00876 0.90567 0.90652 1.65880 1.25521 1.05599 1.27812 0.92734 0.99653 0.95782 0.95327 0.90670 0.91807 0.90273 0.89142 0.94879 0.86289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.10 13.96 55.43 0.77 -27.32 15 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 15 3 Si 0.87 21.86 27.47 -169.99 -4.67 17.19 15 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 15 6 H -0.27 -6.49 6.54 56.52 0.37 -6.12 15 7 C -0.51 -14.77 9.20 -34.44 -0.32 -15.08 15 8 H 0.08 2.60 7.46 -52.49 -0.39 2.21 15 9 C 0.16 3.96 3.76 -4.98 -0.02 3.94 15 10 N -0.50 -11.11 4.51 -232.57 -1.05 -12.15 15 11 C 0.07 1.24 5.69 -3.05 -0.02 1.22 15 12 C 0.04 0.58 5.69 -66.52 -0.38 0.20 15 13 H 0.09 1.12 8.14 -51.93 -0.42 0.70 15 14 C -0.20 -2.64 7.41 -25.65 -0.19 -2.83 15 15 C 0.04 0.60 5.65 -66.52 -0.38 0.22 15 16 H 0.09 1.25 8.14 -51.93 -0.42 0.83 15 17 C 0.08 1.67 5.42 -2.15 -0.01 1.66 15 18 N -0.62 -9.95 8.03 -111.56 -0.90 -10.85 15 19 H 0.26 7.65 8.31 -40.82 -0.34 7.31 15 20 H -0.01 -0.36 7.10 -51.93 -0.37 -0.72 15 21 H 0.02 0.61 7.51 -51.93 -0.39 0.22 15 22 H 0.03 0.50 8.04 -51.93 -0.42 0.08 15 23 H 0.07 1.32 8.14 -51.93 -0.42 0.90 15 24 H 0.06 0.88 7.98 -51.93 -0.41 0.46 15 25 H 0.08 0.86 8.14 -51.93 -0.42 0.44 15 26 H 0.09 1.98 7.31 -51.93 -0.38 1.60 15 27 H 0.03 0.65 7.96 -51.92 -0.41 0.23 15 28 H 0.32 4.18 8.74 -39.29 -0.34 3.84 15 LS Contribution 225.97 15.07 3.41 3.41 Total: -1.00 -31.75 225.97 -7.82 -39.57 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -3.98 Total: -1.05 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -1.41 Total: -8.78 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: -1.17 Total: -50.33 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -31.75 -7.82 -39.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261125292.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.132 kcal (2) G-P(sol) polarization free energy of solvation -31.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds