Wall clock time and date at job start Mon Mar 30 2020 01:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86811 * 119.99584 * 2 1 4 4 H 1.48498 * 109.46842 * 270.00041 * 3 2 1 5 5 H 1.48501 * 109.47073 * 30.00180 * 3 2 1 6 6 H 1.48500 * 109.46984 * 150.00307 * 3 2 1 7 7 C 1.37873 * 120.00548 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99490 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00139 * 179.97438 * 7 2 1 10 10 N 1.46902 * 109.46857 * 179.97438 * 9 7 2 11 11 C 1.47366 * 111.00055 * 170.00104 * 10 9 7 12 12 C 1.53998 * 108.19429 * 170.63911 * 11 10 9 13 13 H 1.08996 * 115.22444 * 153.91602 * 12 11 10 14 14 C 1.54272 * 110.80904 * 288.20438 * 12 11 10 15 15 C 1.54266 * 84.60648 * 79.43846 * 14 12 11 16 16 H 1.09002 * 116.04642 * 146.68309 * 15 14 12 17 17 C 1.48960 * 110.77269 * 293.23277 * 10 9 7 18 18 N 1.48567 * 110.21712 * 20.17119 * 12 11 10 19 19 H 0.96997 * 120.00323 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.46784 * 60.00796 * 9 7 2 21 21 H 1.09000 * 109.47185 * 300.00290 * 9 7 2 22 22 H 1.09006 * 109.71640 * 50.95947 * 11 10 9 23 23 H 1.09002 * 109.71923 * 290.31945 * 11 10 9 24 24 H 1.08998 * 114.00596 * 325.52533 * 14 12 11 25 25 H 1.08995 * 114.00887 * 193.35398 * 14 12 11 26 26 H 1.09004 * 110.44194 * 69.55913 * 17 10 9 27 27 H 1.09008 * 109.81717 * 308.38532 * 17 10 9 28 28 H 1.00907 * 110.99907 * 169.06180 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7001 6 1 3.5467 1.4404 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1938 -0.0011 10 7 4.0013 -2.5788 -0.0010 11 6 5.4546 -2.6252 -0.2404 12 6 5.9368 -4.0668 0.0059 13 1 6.8388 -4.3537 -0.5346 14 6 5.9137 -4.4027 1.5115 15 6 4.4007 -4.6099 1.2934 16 1 3.9306 -5.3819 1.9027 17 6 3.6599 -3.2598 1.2791 18 7 4.7943 -5.0123 -0.0815 19 1 -0.4850 0.8400 0.0004 20 1 3.8752 -0.6803 0.8889 21 1 3.8745 -0.6797 -0.8911 22 1 5.9620 -1.9455 0.4443 23 1 5.6671 -2.3371 -1.2700 24 1 6.1572 -3.5594 2.1577 25 1 6.4533 -5.3135 1.7710 26 1 2.5852 -3.4292 1.3454 27 1 3.9894 -2.6507 2.1210 28 1 5.1167 -5.9683 -0.1002 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261125292.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:16 Heat of formation + Delta-G solvation = 37.324972 kcal Electronic energy + Delta-G solvation = -11248.724967 eV Core-core repulsion = 9300.417290 eV Total energy + Delta-G solvation = -1948.307677 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.78637 -36.71756 -34.41262 -30.77715 -30.04000 -27.92187 -25.40340 -23.50966 -22.41771 -19.54386 -18.94868 -17.86418 -16.42309 -16.04340 -15.47900 -15.25520 -14.73235 -14.38050 -14.24949 -13.48665 -13.08809 -12.97138 -12.93609 -12.71257 -12.31579 -11.86947 -11.62284 -11.43669 -11.08561 -10.78148 -9.23202 -8.90617 -8.28407 -6.32222 1.33841 1.35784 1.46482 2.34144 2.84439 3.04393 3.40208 3.47568 3.72451 4.10932 4.28985 4.41517 4.56294 4.58293 4.67095 4.77120 4.81996 4.95451 4.97724 5.05808 5.16552 5.30330 5.53955 5.97130 6.32805 6.57231 6.74097 6.76105 7.31573 8.88606 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.073416 B = 0.011616 C = 0.010793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.299053 B = 2409.892977 C = 2593.750355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.951 3.049 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.252 1.252 7 C -0.516 4.516 8 H 0.033 0.967 9 C 0.168 3.832 10 N -0.525 5.525 11 C 0.061 3.939 12 C 0.041 3.959 13 H 0.126 0.874 14 C -0.173 4.173 15 C 0.033 3.967 16 H 0.112 0.888 17 C 0.081 3.919 18 N -0.649 5.649 19 H 0.267 0.733 20 H -0.013 1.013 21 H 0.027 0.973 22 H 0.038 0.962 23 H 0.075 0.925 24 H 0.060 0.940 25 H 0.115 0.885 26 H 0.051 0.949 27 H 0.033 0.967 28 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.780 -6.590 3.268 16.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.774 3.226 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.176 1.176 7 C -0.555 4.555 8 H 0.051 0.949 9 C 0.041 3.959 10 N -0.250 5.250 11 C -0.068 4.068 12 C -0.070 4.070 13 H 0.144 0.856 14 C -0.211 4.211 15 C -0.078 4.078 16 H 0.129 0.871 17 C -0.048 4.048 18 N -0.279 5.279 19 H 0.076 0.924 20 H 0.004 0.996 21 H 0.045 0.955 22 H 0.056 0.944 23 H 0.094 0.906 24 H 0.079 0.921 25 H 0.134 0.866 26 H 0.070 0.930 27 H 0.051 0.949 28 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 13.812 -6.429 2.302 15.407 hybrid contribution 0.616 0.885 1.257 1.656 sum 14.427 -5.543 3.558 15.860 Atomic orbital electron populations 1.70057 1.08167 1.28153 1.52614 1.25896 0.95666 1.03255 0.94289 0.85656 0.79218 0.78359 0.79322 1.18908 1.20476 1.17592 1.21244 0.91138 0.93171 1.49911 0.94887 1.19995 0.94378 0.86783 0.94758 1.62809 1.12675 1.16178 1.33359 1.22329 0.87828 0.95515 1.01081 1.23636 0.94843 0.92892 0.95599 0.85597 1.25051 0.95721 1.03244 0.97044 1.23633 0.95482 0.96674 0.92019 0.87053 1.22283 0.99377 0.93274 0.89832 1.65734 1.26814 1.07270 1.28072 0.92379 0.99592 0.95537 0.94404 0.90625 0.92095 0.86637 0.93044 0.94915 0.83963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.01 13.96 21.45 0.30 -60.71 15 2 C 0.01 0.36 5.47 84.65 0.46 0.82 15 3 Si 0.95 45.16 27.47 68.60 1.88 47.04 15 4 H -0.26 -12.01 7.11 99.48 0.71 -11.30 15 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 15 6 H -0.25 -11.18 6.54 99.48 0.65 -10.53 15 7 C -0.52 -31.36 9.20 25.60 0.24 -31.13 15 8 H 0.03 2.25 7.46 -2.91 -0.02 2.23 15 9 C 0.17 8.51 3.76 85.56 0.32 8.83 15 10 N -0.53 -23.32 4.51 -889.73 -4.01 -27.33 15 11 C 0.06 2.07 5.69 86.55 0.49 2.57 15 12 C 0.04 1.06 5.69 44.77 0.25 1.31 15 13 H 0.13 2.46 8.14 -2.39 -0.02 2.44 15 14 C -0.17 -3.89 7.41 31.54 0.23 -3.65 15 15 C 0.03 0.96 5.65 44.77 0.25 1.22 15 16 H 0.11 2.82 8.14 -2.39 -0.02 2.80 15 17 C 0.08 3.26 5.42 86.24 0.47 3.73 15 18 N -0.65 -19.21 8.03 -506.88 -4.07 -23.28 15 19 H 0.27 15.91 8.31 -92.71 -0.77 15.14 15 20 H -0.01 -0.67 7.10 -2.39 -0.02 -0.69 15 21 H 0.03 1.32 7.51 -2.39 -0.02 1.30 15 22 H 0.04 1.22 8.04 -2.38 -0.02 1.20 15 23 H 0.08 2.52 8.14 -2.39 -0.02 2.50 15 24 H 0.06 1.44 7.98 -2.39 -0.02 1.42 15 25 H 0.12 1.85 8.14 -2.39 -0.02 1.83 15 26 H 0.05 2.41 7.31 -2.38 -0.02 2.39 15 27 H 0.03 1.29 7.96 -2.38 -0.02 1.27 15 28 H 0.34 7.73 8.74 -89.69 -0.78 6.95 15 Total: -1.00 -70.89 225.97 -2.87 -73.76 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 0.30 Total: 6.81 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: 2.72 Total: -16.30 kcal Atomic # 7 Polarization: -103.53 SS G_CDS: -7.78 Total: -111.31 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.88 Total: 47.04 kcal Total: -70.89 -2.87 -73.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261125292.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.082 kcal (2) G-P(sol) polarization free energy of solvation -70.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds