Wall clock time and date at job start Mon Mar 30 2020 01:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00458 * 2 1 4 4 H 1.48500 * 109.46919 * 274.98080 * 3 2 1 5 5 H 1.48506 * 109.47054 * 34.97801 * 3 2 1 6 6 H 1.48494 * 109.47385 * 154.98222 * 3 2 1 7 7 C 1.38813 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00530 * 171.61736 * 7 2 1 9 9 N 1.36948 * 119.99769 * 351.61198 * 7 2 1 10 10 C 1.48149 * 127.83275 * 163.74482 * 9 7 2 11 11 C 1.54392 * 104.61428 * 140.42104 * 10 9 7 12 12 H 1.09001 * 118.17611 * 244.19721 * 11 10 9 13 13 C 1.52997 * 118.12417 * 87.18860 * 11 10 9 14 14 H 1.09000 * 117.44070 * 16.10551 * 13 11 10 15 15 C 1.52997 * 117.44083 * 160.80938 * 13 11 10 16 16 N 1.46900 * 109.47130 * 244.23921 * 15 13 11 17 17 C 1.53000 * 60.55651 * 268.46008 * 13 11 10 18 18 H 1.09002 * 119.53877 * 248.23868 * 17 13 11 19 19 C 1.51821 * 127.61338 * 344.08647 * 9 7 2 20 20 H 0.96998 * 119.99339 * 0.02562 * 1 2 3 21 21 H 1.08995 * 110.40810 * 21.63355 * 10 9 7 22 22 H 1.09004 * 110.40141 * 259.19983 * 10 9 7 23 23 H 1.08998 * 109.47530 * 4.23691 * 15 13 11 24 24 H 1.09000 * 109.47001 * 124.24038 * 15 13 11 25 25 H 1.00897 * 111.00053 * 180.02562 * 16 15 13 26 26 H 1.00907 * 110.99883 * 303.95412 * 16 15 13 27 27 H 1.09004 * 111.95656 * 100.91394 * 19 9 7 28 28 H 1.09005 * 110.52925 * 337.32076 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3926 2.1070 -1.3948 5 1 1.5044 2.6200 0.8026 6 1 3.5965 1.4119 0.5921 7 6 2.0102 -1.2022 0.0005 8 1 3.0815 -1.2074 -0.1358 9 7 1.3364 -2.3817 0.1741 10 6 1.8155 -3.7532 -0.1165 11 6 1.2799 -4.6086 1.0519 12 1 2.0023 -5.0755 1.7214 13 6 -0.1254 -5.2005 0.9273 14 1 -0.5747 -5.2232 -0.0655 15 6 -0.4769 -6.3798 1.8364 16 7 -0.7293 -7.5721 1.0163 17 6 0.0586 -3.8322 1.5867 18 1 -0.1288 -3.7208 2.6547 19 6 -0.0741 -2.5741 0.7018 20 1 -0.4849 0.8401 -0.0004 21 1 2.9049 -3.7786 -0.1380 22 1 1.4073 -4.1055 -1.0638 23 1 0.3530 -6.5750 2.5156 24 1 -1.3700 -6.1401 2.4135 25 1 -0.9641 -8.3653 1.5940 26 1 -1.4516 -7.3955 0.3341 27 1 -0.7897 -2.7484 -0.1018 28 1 -0.3776 -1.7169 1.3029 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261126828.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:12 Heat of formation + Delta-G solvation = 56.295397 kcal Electronic energy + Delta-G solvation = -10961.415732 eV Core-core repulsion = 9013.930674 eV Total energy + Delta-G solvation = -1947.485058 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.64143 -34.63872 -32.80757 -30.39221 -27.03493 -26.30738 -23.96698 -20.87538 -19.83430 -19.07601 -16.74389 -15.75113 -14.83219 -14.36028 -14.22257 -13.54964 -13.08876 -12.59468 -12.30074 -11.59787 -11.15714 -10.98065 -10.77283 -10.58942 -10.21608 -10.06715 -9.61525 -9.20918 -8.97939 -8.64945 -8.49886 -6.79224 -5.73880 -3.06696 3.41154 3.46610 3.49034 4.24435 4.49766 4.70871 5.16581 5.38891 5.52342 5.52813 5.72135 5.79510 5.98093 6.04160 6.07084 6.32030 6.67224 6.79026 6.84515 7.03361 7.18757 7.39163 7.47143 7.58154 7.75667 8.21835 9.12459 9.79007 10.57861 11.41533 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.105852 B = 0.009549 C = 0.009141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 264.457164 B = 2931.536612 C = 3062.352938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.222 4.222 8 H 0.076 0.924 9 N -0.601 5.601 10 C 0.156 3.844 11 C -0.165 4.165 12 H 0.100 0.900 13 C -0.131 4.131 14 H 0.097 0.903 15 C 0.095 3.905 16 N -0.849 5.849 17 C -0.174 4.174 18 H 0.097 0.903 19 C 0.185 3.815 20 H 0.253 0.747 21 H 0.048 0.952 22 H 0.023 0.977 23 H 0.069 0.931 24 H 0.027 0.973 25 H 0.336 0.664 26 H 0.340 0.660 27 H 0.028 0.972 28 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.642 -9.738 3.265 10.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.351 4.351 8 H 0.093 0.907 9 N -0.326 5.326 10 C 0.030 3.970 11 C -0.185 4.185 12 H 0.118 0.882 13 C -0.150 4.150 14 H 0.115 0.885 15 C -0.035 4.035 16 N -0.378 5.378 17 C -0.194 4.194 18 H 0.115 0.885 19 C 0.061 3.939 20 H 0.063 0.937 21 H 0.067 0.933 22 H 0.040 0.960 23 H 0.087 0.913 24 H 0.045 0.955 25 H 0.148 0.852 26 H 0.152 0.848 27 H 0.046 0.954 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.876 -9.357 3.017 9.870 hybrid contribution -0.550 0.863 0.455 1.120 sum -1.426 -8.494 3.472 9.286 Atomic orbital electron populations 1.69900 1.05066 1.25203 1.56377 1.24877 0.95627 0.97849 1.02137 0.86113 0.78757 0.83462 0.77504 1.21588 1.21639 1.20563 1.19042 0.90617 0.82535 1.42889 0.90662 1.46109 1.12604 0.99988 1.73895 1.21093 0.96933 0.85904 0.93083 1.23885 0.89964 1.02272 1.02383 0.88238 1.22334 0.99851 0.92820 0.99966 0.88514 1.21299 0.99215 0.88888 0.94129 1.58687 1.52246 1.06670 1.20211 1.24153 1.03182 0.92501 0.99610 0.88486 1.21658 0.86284 0.92250 0.93684 0.93704 0.93314 0.95979 0.91272 0.95470 0.85216 0.84760 0.95416 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.53 10.87 55.49 0.60 -26.92 15 2 C -0.01 -0.24 5.42 -17.43 -0.09 -0.33 15 3 Si 0.91 22.38 29.56 -169.99 -5.03 17.36 15 4 H -0.29 -7.07 7.11 56.52 0.40 -6.66 15 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 15 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 15 7 C -0.22 -6.41 10.36 -15.05 -0.16 -6.57 15 8 H 0.08 2.10 7.84 -52.49 -0.41 1.68 15 9 N -0.60 -16.13 3.45 -165.70 -0.57 -16.70 15 10 C 0.16 3.51 7.05 -2.41 -0.02 3.49 15 11 C -0.17 -3.19 6.74 -89.22 -0.60 -3.79 15 12 H 0.10 1.78 8.12 -51.93 -0.42 1.36 15 13 C -0.13 -2.24 5.49 -90.62 -0.50 -2.73 15 14 H 0.10 1.73 8.13 -51.93 -0.42 1.31 15 15 C 0.10 1.31 7.06 -3.83 -0.03 1.28 15 16 N -0.85 -10.17 9.62 -10.37 -0.10 -10.27 15 17 C -0.17 -3.49 6.76 -89.22 -0.60 -4.09 15 18 H 0.10 1.82 8.14 -51.93 -0.42 1.40 15 19 C 0.19 4.63 5.90 -0.30 0.00 4.63 15 20 H 0.25 7.30 8.31 -40.82 -0.34 6.96 15 21 H 0.05 1.05 8.14 -51.93 -0.42 0.62 15 22 H 0.02 0.51 8.14 -51.93 -0.42 0.08 15 23 H 0.07 0.94 7.94 -51.93 -0.41 0.53 15 24 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 15 25 H 0.34 3.17 9.08 -39.29 -0.36 2.82 15 26 H 0.34 3.74 8.98 -39.29 -0.35 3.39 15 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 15 28 H 0.09 2.40 6.64 -51.93 -0.34 2.05 15 LS Contribution 235.35 15.07 3.55 3.55 Total: -1.00 -30.87 235.35 -7.52 -38.39 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -3.97 Total: 2.73 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -2.00 Total: -8.13 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: -0.07 Total: -53.89 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.03 Total: 17.36 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -30.87 -7.52 -38.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126828.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.683 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds