Wall clock time and date at job start Mon Mar 30 2020 01:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00458 * 2 1 4 4 H 1.48500 * 109.46919 * 274.98080 * 3 2 1 5 5 H 1.48506 * 109.47054 * 34.97801 * 3 2 1 6 6 H 1.48494 * 109.47385 * 154.98222 * 3 2 1 7 7 C 1.38813 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00530 * 171.61736 * 7 2 1 9 9 N 1.36948 * 119.99769 * 351.61198 * 7 2 1 10 10 C 1.48149 * 127.83275 * 163.74482 * 9 7 2 11 11 C 1.54392 * 104.61428 * 140.42104 * 10 9 7 12 12 H 1.09001 * 118.17611 * 244.19721 * 11 10 9 13 13 C 1.52997 * 118.12417 * 87.18860 * 11 10 9 14 14 H 1.09000 * 117.44070 * 16.10551 * 13 11 10 15 15 C 1.52997 * 117.44083 * 160.80938 * 13 11 10 16 16 N 1.46900 * 109.47130 * 244.23921 * 15 13 11 17 17 C 1.53000 * 60.55651 * 268.46008 * 13 11 10 18 18 H 1.09002 * 119.53877 * 248.23868 * 17 13 11 19 19 C 1.51821 * 127.61338 * 344.08647 * 9 7 2 20 20 H 0.96998 * 119.99339 * 0.02562 * 1 2 3 21 21 H 1.08995 * 110.40810 * 21.63355 * 10 9 7 22 22 H 1.09004 * 110.40141 * 259.19983 * 10 9 7 23 23 H 1.08998 * 109.47530 * 4.23691 * 15 13 11 24 24 H 1.09000 * 109.47001 * 124.24038 * 15 13 11 25 25 H 1.00897 * 111.00053 * 180.02562 * 16 15 13 26 26 H 1.00907 * 110.99883 * 303.95412 * 16 15 13 27 27 H 1.09004 * 111.95656 * 100.91394 * 19 9 7 28 28 H 1.09005 * 110.52925 * 337.32076 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3926 2.1070 -1.3948 5 1 1.5044 2.6200 0.8026 6 1 3.5965 1.4119 0.5921 7 6 2.0102 -1.2022 0.0005 8 1 3.0815 -1.2074 -0.1358 9 7 1.3364 -2.3817 0.1741 10 6 1.8155 -3.7532 -0.1165 11 6 1.2799 -4.6086 1.0519 12 1 2.0023 -5.0755 1.7214 13 6 -0.1254 -5.2005 0.9273 14 1 -0.5747 -5.2232 -0.0655 15 6 -0.4769 -6.3798 1.8364 16 7 -0.7293 -7.5721 1.0163 17 6 0.0586 -3.8322 1.5867 18 1 -0.1288 -3.7208 2.6547 19 6 -0.0741 -2.5741 0.7018 20 1 -0.4849 0.8401 -0.0004 21 1 2.9049 -3.7786 -0.1380 22 1 1.4073 -4.1055 -1.0638 23 1 0.3530 -6.5750 2.5156 24 1 -1.3700 -6.1401 2.4135 25 1 -0.9641 -8.3653 1.5940 26 1 -1.4516 -7.3955 0.3341 27 1 -0.7897 -2.7484 -0.1018 28 1 -0.3776 -1.7169 1.3029 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261126828.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:12 Heat of formation + Delta-G solvation = 34.415167 kcal Electronic energy + Delta-G solvation = -10962.364530 eV Core-core repulsion = 9013.930674 eV Total energy + Delta-G solvation = -1948.433855 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.27419 -36.14016 -34.49111 -32.28557 -28.88169 -28.10836 -25.51786 -22.69245 -21.32770 -20.75451 -18.82748 -16.98678 -16.73986 -15.94173 -15.45405 -15.07268 -14.79795 -14.53183 -13.81509 -13.19772 -13.12613 -12.86727 -12.68742 -12.26038 -11.99087 -11.89775 -11.65805 -10.90624 -10.62785 -10.54772 -9.51764 -8.91403 -7.92012 -5.27809 1.45440 1.47248 1.57272 2.47686 2.77822 3.25912 3.50246 3.63980 3.87744 4.07080 4.33994 4.38845 4.47357 4.59785 4.70996 4.74927 4.95025 5.00959 5.34274 5.39073 5.43268 5.51541 5.64569 6.12987 6.26366 6.67439 6.95430 7.64824 8.46403 9.22974 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.105852 B = 0.009549 C = 0.009141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 264.457164 B = 2931.536612 C = 3062.352938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.064 4.064 3 Si 0.982 3.018 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.268 1.268 7 C -0.242 4.242 8 H 0.079 0.921 9 N -0.627 5.627 10 C 0.149 3.851 11 C -0.161 4.161 12 H 0.123 0.877 13 C -0.100 4.100 14 H 0.088 0.912 15 C 0.103 3.897 16 N -0.855 5.855 17 C -0.183 4.183 18 H 0.113 0.887 19 C 0.188 3.812 20 H 0.250 0.750 21 H 0.055 0.945 22 H 0.017 0.983 23 H 0.078 0.922 24 H 0.042 0.958 25 H 0.354 0.646 26 H 0.346 0.654 27 H 0.006 0.994 28 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.092 -11.036 4.037 11.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.258 4.258 3 Si 0.809 3.191 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.192 1.192 7 C -0.371 4.371 8 H 0.097 0.903 9 N -0.352 5.352 10 C 0.024 3.976 11 C -0.181 4.181 12 H 0.141 0.859 13 C -0.119 4.119 14 H 0.106 0.894 15 C -0.028 4.028 16 N -0.386 5.386 17 C -0.203 4.203 18 H 0.131 0.869 19 C 0.064 3.936 20 H 0.059 0.941 21 H 0.074 0.926 22 H 0.035 0.965 23 H 0.096 0.904 24 H 0.060 0.940 25 H 0.168 0.832 26 H 0.159 0.841 27 H 0.024 0.976 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.318 -10.703 3.791 11.359 hybrid contribution -0.733 1.215 0.156 1.428 sum -1.051 -9.488 3.948 10.330 Atomic orbital electron populations 1.70097 1.06591 1.25698 1.57441 1.25754 0.96533 1.01279 1.02184 0.85021 0.77834 0.78797 0.77399 1.21216 1.21744 1.19233 1.19443 0.91176 0.83836 1.42631 0.90306 1.46461 1.13225 1.01078 1.74467 1.21233 0.97466 0.84622 0.94266 1.23856 0.90916 1.02235 1.01093 0.85910 1.22370 0.97392 0.92287 0.99865 0.89406 1.21197 1.00197 0.87947 0.93462 1.58621 1.52901 1.06587 1.20538 1.23883 1.04960 0.91790 0.99643 0.86866 1.21420 0.85361 0.93545 0.93253 0.94125 0.92638 0.96480 0.90401 0.94015 0.83244 0.84123 0.97630 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.53 10.87 21.65 0.24 -58.29 15 2 C -0.06 -3.74 5.42 84.86 0.46 -3.28 15 3 Si 0.98 46.48 29.56 68.60 2.03 48.50 15 4 H -0.29 -13.26 7.11 99.48 0.71 -12.55 15 5 H -0.29 -13.71 7.11 99.48 0.71 -13.01 15 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 15 7 C -0.24 -14.14 10.36 84.03 0.87 -13.27 15 8 H 0.08 4.40 7.84 -2.91 -0.02 4.38 15 9 N -0.63 -34.14 3.45 -678.17 -2.34 -36.48 15 10 C 0.15 6.65 7.05 86.53 0.61 7.26 15 11 C -0.16 -5.92 6.74 -9.89 -0.07 -5.98 15 12 H 0.12 3.97 8.12 -2.39 -0.02 3.95 15 13 C -0.10 -3.20 5.49 -10.80 -0.06 -3.26 15 14 H 0.09 3.01 8.13 -2.39 -0.02 2.99 15 15 C 0.10 2.44 7.06 86.30 0.61 3.05 15 16 N -0.85 -17.50 9.62 -186.72 -1.80 -19.30 15 17 C -0.18 -7.13 6.76 -9.89 -0.07 -7.20 15 18 H 0.11 4.06 8.14 -2.39 -0.02 4.04 15 19 C 0.19 9.65 5.90 85.79 0.51 10.16 15 20 H 0.25 14.81 8.31 -92.71 -0.77 14.04 15 21 H 0.06 2.35 8.14 -2.39 -0.02 2.33 15 22 H 0.02 0.78 8.14 -2.38 -0.02 0.76 15 23 H 0.08 1.78 7.94 -2.39 -0.02 1.76 15 24 H 0.04 0.91 8.14 -2.39 -0.02 0.89 15 25 H 0.35 5.36 9.08 -89.70 -0.81 4.54 15 26 H 0.35 6.55 8.98 -89.69 -0.81 5.75 15 27 H 0.01 0.31 8.14 -2.39 -0.02 0.29 15 28 H 0.05 3.07 6.64 -2.38 -0.02 3.06 15 Total: -1.00 -66.68 235.35 0.53 -66.15 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -0.46 Total: 11.93 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: 2.86 Total: -12.52 kcal Atomic # 7 Polarization: -110.16 SS G_CDS: -3.90 Total: -114.07 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.50 kcal Total: -66.68 0.53 -66.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126828.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.570 kcal (2) G-P(sol) polarization free energy of solvation -66.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds