Wall clock time and date at job start Mon Mar 30 2020 02:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47159 * 2 1 4 4 H 1.08996 * 109.47164 * 305.00107 * 3 2 1 5 5 C 1.53004 * 109.46811 * 64.99914 * 3 2 1 6 6 C 1.52995 * 109.47189 * 184.99841 * 3 2 1 7 7 H 1.09006 * 109.47389 * 294.08364 * 6 3 2 8 8 C 1.50703 * 109.47294 * 54.08208 * 6 3 2 9 9 H 1.08001 * 119.99776 * 58.61172 * 8 6 3 10 10 C 1.37881 * 120.00065 * 238.62025 * 8 6 3 11 11 N 1.31513 * 119.99736 * 178.70969 * 10 8 6 12 12 Si 1.86790 * 119.99996 * 358.70360 * 10 8 6 13 13 H 1.48498 * 109.47364 * 84.43852 * 12 10 8 14 14 H 1.48499 * 109.47313 * 204.43714 * 12 10 8 15 15 H 1.48500 * 109.47667 * 324.43915 * 12 10 8 16 16 C 1.53001 * 109.47313 * 174.08281 * 6 3 2 17 17 C 1.52997 * 117.49686 * 246.31550 * 16 6 3 18 18 C 1.52993 * 60.00183 * 252.50879 * 17 16 6 19 19 H 1.09005 * 109.47047 * 179.97438 * 1 2 3 20 20 H 1.08995 * 109.46933 * 60.00041 * 1 2 3 21 21 H 1.09000 * 109.47152 * 300.00149 * 1 2 3 22 22 H 1.09003 * 109.47208 * 119.99829 * 2 1 3 23 23 H 1.09000 * 109.47152 * 239.99851 * 2 1 3 24 24 H 1.08990 * 109.47452 * 299.65689 * 5 3 2 25 25 H 1.09006 * 109.47157 * 59.66180 * 5 3 2 26 26 H 1.09005 * 109.46677 * 179.65434 * 5 3 2 27 27 H 0.96999 * 119.99695 * 179.97438 * 11 10 8 28 28 H 1.09001 * 115.55059 * 32.01899 * 16 6 3 29 29 H 1.09004 * 117.50409 * 359.97438 * 17 16 6 30 30 H 1.09005 * 117.49961 * 145.02111 * 17 16 6 31 31 H 1.09000 * 117.50235 * 252.51171 * 18 17 16 32 32 H 1.08999 * 117.50002 * 107.48604 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4443 -0.1257 7 1 4.0035 0.9983 0.7670 8 6 3.9700 0.6452 -1.3374 9 1 3.6088 0.9269 -2.3155 10 6 4.8016 -0.4456 -1.1974 11 7 5.1347 -1.1580 -2.2515 12 14 5.4552 -0.9113 0.4893 13 1 4.4527 -1.7495 1.1946 14 1 6.7195 -1.6751 0.3367 15 1 5.7132 0.3204 1.2777 16 6 4.0626 2.8835 -0.2740 17 6 4.7043 3.2751 -1.6066 18 6 5.5744 3.1027 -0.3600 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 1.8934 -0.5138 0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 0.5488 2.1306 1.3941 25 1 2.0649 1.5839 2.1495 26 1 2.0039 3.1523 1.3100 27 1 5.7201 -1.9252 -2.1530 28 1 3.4728 3.6406 0.2426 29 1 4.7723 2.5074 -2.3775 30 1 4.5367 4.2901 -1.9669 31 1 5.9791 4.0043 0.0999 32 1 6.2143 2.2217 -0.3107 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261142677.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:50 Heat of formation + Delta-G solvation = -17.357471 kcal Electronic energy + Delta-G solvation = -11634.056316 eV Core-core repulsion = 9786.917774 eV Total energy + Delta-G solvation = -1847.138542 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.37244 -36.37778 -34.34858 -31.27895 -29.28565 -25.28022 -24.61304 -23.10810 -21.06974 -20.08914 -18.87868 -16.48675 -16.22075 -15.81619 -15.06689 -14.65129 -14.39218 -14.08419 -13.74059 -13.09741 -12.79028 -12.74038 -12.37345 -12.10918 -11.94785 -11.82149 -11.56480 -11.48892 -11.13424 -10.86198 -10.66697 -10.48428 -10.20368 -8.20256 -6.16823 1.32191 1.34861 1.43163 2.38163 3.16710 3.24255 4.03918 4.26143 4.34441 4.43693 4.44862 4.57087 4.70615 4.81387 4.85926 4.92613 4.94942 5.10831 5.17121 5.27033 5.29691 5.34057 5.43888 5.53115 5.64912 5.66312 5.79069 5.88123 5.93379 6.45259 6.87377 7.44789 8.97027 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.027712 B = 0.021234 C = 0.015435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.161750 B = 1318.303499 C = 1813.596072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C -0.074 4.074 4 H 0.051 0.949 5 C -0.142 4.142 6 C 0.032 3.968 7 H 0.030 0.970 8 C -0.469 4.469 9 H 0.034 0.966 10 C 0.015 3.985 11 N -0.956 5.956 12 Si 0.920 3.080 13 H -0.269 1.269 14 H -0.298 1.298 15 H -0.247 1.247 16 C -0.143 4.143 17 C -0.174 4.174 18 C -0.184 4.184 19 H 0.051 0.949 20 H 0.050 0.950 21 H 0.068 0.932 22 H 0.039 0.961 23 H 0.041 0.959 24 H 0.066 0.934 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.259 0.741 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.403 6.607 7.680 11.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.093 4.093 4 H 0.070 0.930 5 C -0.199 4.199 6 C 0.013 3.987 7 H 0.048 0.952 8 C -0.508 4.508 9 H 0.053 0.947 10 C -0.180 4.180 11 N -0.597 5.597 12 Si 0.747 3.253 13 H -0.194 1.194 14 H -0.225 1.225 15 H -0.171 1.171 16 C -0.161 4.161 17 C -0.211 4.211 18 C -0.221 4.221 19 H 0.070 0.930 20 H 0.070 0.930 21 H 0.087 0.913 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.085 0.915 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.128 0.872 29 H 0.093 0.907 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.305 6.456 7.631 11.316 hybrid contribution 0.771 -0.830 0.109 1.138 sum -4.534 5.626 7.741 10.589 Atomic orbital electron populations 1.21776 0.94817 1.01337 1.01981 1.21456 0.96004 0.97259 1.00417 1.21067 0.95782 0.95124 0.97335 0.93000 1.21919 1.01315 1.00326 0.96373 1.18951 0.93382 0.91442 0.94921 0.95217 1.21034 1.26380 1.09760 0.93577 0.94742 1.25726 0.96892 0.96465 0.98947 1.70038 1.38552 1.19849 1.31300 0.86151 0.77879 0.79002 0.82306 1.19447 1.22472 1.17136 1.22657 0.94222 0.98861 1.00383 1.22865 1.05152 1.00970 0.92097 1.22753 0.94106 1.01836 1.03399 0.93028 0.93044 0.91281 0.94256 0.93983 0.91517 0.93598 0.92082 0.93160 0.87204 0.90708 0.88434 0.87525 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.31 9.67 71.98 0.70 -3.62 16 2 C -0.11 -4.47 5.18 30.59 0.16 -4.31 16 3 C -0.07 -2.84 1.97 -10.79 -0.02 -2.86 16 4 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 5 C -0.14 -4.25 8.77 71.98 0.63 -3.62 16 6 C 0.03 1.42 1.65 -11.54 -0.02 1.40 16 7 H 0.03 1.37 4.61 -2.38 -0.01 1.36 16 8 C -0.47 -25.55 5.24 25.60 0.13 -25.42 16 9 H 0.03 2.12 7.35 -2.91 -0.02 2.10 16 10 C 0.02 0.87 5.47 84.66 0.46 1.34 16 11 N -0.96 -59.70 13.96 21.45 0.30 -59.40 16 12 Si 0.92 44.82 27.09 68.60 1.86 46.68 16 13 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 14 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 15 H -0.25 -11.28 6.58 99.48 0.65 -10.63 16 16 C -0.14 -5.61 5.52 -10.79 -0.06 -5.67 16 17 C -0.17 -6.97 9.68 30.59 0.30 -6.67 16 18 C -0.18 -7.10 10.06 30.59 0.31 -6.80 16 19 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 20 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 21 H 0.07 1.78 6.57 -2.39 -0.02 1.76 16 22 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.04 1.98 6.86 -2.39 -0.02 1.97 16 24 H 0.07 1.69 6.58 -2.39 -0.02 1.67 16 25 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 26 H 0.06 1.66 6.44 -2.38 -0.02 1.65 16 27 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 28 H 0.11 3.64 6.43 -2.39 -0.02 3.63 16 29 H 0.07 3.62 6.07 -2.38 -0.01 3.61 16 30 H 0.10 3.25 8.14 -2.38 -0.02 3.23 16 31 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 32 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -61.73 249.40 5.76 -55.97 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 1.02 Total: 12.99 kcal Atomic # 6 Polarization: -58.81 SS G_CDS: 2.59 Total: -56.23 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: 0.30 Total: -59.40 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.86 Total: 46.68 kcal Total: -61.73 5.76 -55.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261142677.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.610 kcal (2) G-P(sol) polarization free energy of solvation -61.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds