Wall clock time and date at job start Mon Mar 30 2020 02:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47011 * 2 1 4 4 H 1.09004 * 110.01390 * 54.29914 * 3 2 1 5 5 C 1.54262 * 110.03086 * 292.91470 * 3 2 1 6 6 C 1.54974 * 104.15960 * 217.13456 * 5 3 2 7 7 C 1.54898 * 102.77239 * 37.88527 * 6 5 3 8 8 C 1.53869 * 110.03389 * 175.69271 * 3 2 1 9 9 H 1.08999 * 110.03405 * 238.57176 * 8 3 2 10 10 C 1.53002 * 110.03191 * 359.97438 * 8 3 2 11 11 C 1.50703 * 109.47100 * 184.99938 * 10 8 3 12 12 H 1.07994 * 119.99713 * 0.02562 * 11 10 8 13 13 C 1.37875 * 120.00155 * 180.02562 * 11 10 8 14 14 N 1.31512 * 120.00484 * 179.97438 * 13 11 10 15 15 Si 1.86807 * 119.99738 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47233 * 89.99686 * 15 13 11 17 17 H 1.48501 * 109.46829 * 210.00096 * 15 13 11 18 18 H 1.48494 * 109.46901 * 329.99584 * 15 13 11 19 19 H 1.09002 * 109.47611 * 59.99836 * 1 2 3 20 20 H 1.09002 * 109.46888 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47134 * 299.99187 * 1 2 3 22 22 H 1.09004 * 109.47134 * 240.00813 * 2 1 3 23 23 H 1.09002 * 109.47611 * 120.00164 * 2 1 3 24 24 H 1.09003 * 110.48867 * 335.77607 * 5 3 2 25 25 H 1.08998 * 110.49248 * 98.42672 * 5 3 2 26 26 H 1.09001 * 110.71864 * 279.57770 * 6 5 3 27 27 H 1.08996 * 110.76615 * 156.21741 * 6 5 3 28 28 H 1.09005 * 110.48021 * 203.40884 * 7 6 5 29 29 H 1.09000 * 110.59824 * 80.82384 * 7 6 5 30 30 H 1.08996 * 109.47348 * 305.00103 * 10 8 3 31 31 H 1.09004 * 109.46872 * 65.00397 * 10 8 3 32 32 H 0.97002 * 120.00424 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6008 1.9935 0.8317 5 6 1.6840 2.1288 -1.3349 6 6 2.9101 3.0269 -1.6383 7 6 4.0992 2.1544 -1.1647 8 6 3.5747 1.4591 0.1086 9 1 3.8805 2.0187 0.9925 10 6 4.1103 0.0278 0.1832 11 6 5.5994 0.0599 0.4123 12 1 6.1124 1.0065 0.4967 13 6 6.3069 -1.1191 0.5141 14 7 7.6065 -1.0911 0.7136 15 14 5.4196 -2.7564 0.3674 16 1 5.3976 -3.1818 -1.0551 17 1 6.1287 -3.7781 1.1789 18 1 4.0270 -2.6107 0.8621 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8901 22 1 1.8933 -0.5137 -0.8901 23 1 1.8934 -0.5139 0.8900 24 1 1.5512 1.3865 -2.1220 25 1 0.7846 2.7345 -1.2247 26 1 2.8598 3.9539 -1.0672 27 1 2.9834 3.2330 -2.7060 28 1 4.9612 2.7791 -0.9307 29 1 4.3590 1.4159 -1.9232 30 1 3.6273 -0.4984 1.0065 31 1 3.8978 -0.4889 -0.7528 32 1 8.1042 -1.9206 0.7856 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261144219.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:21 Heat of formation + Delta-G solvation = -53.168194 kcal Electronic energy + Delta-G solvation = -11450.568752 eV Core-core repulsion = 9601.877340 eV Total energy + Delta-G solvation = -1848.691412 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.95024 -35.05584 -33.90028 -32.38263 -28.33716 -27.88665 -23.81900 -23.53156 -21.39053 -19.20588 -18.92880 -16.76255 -16.23059 -15.63596 -15.31991 -14.77537 -14.55455 -13.99352 -13.67244 -13.32908 -13.13971 -12.63936 -12.39426 -12.06862 -11.92028 -11.71497 -11.51605 -11.44156 -11.29131 -11.01996 -10.95487 -10.81781 -10.66348 -8.27506 -6.29259 1.33433 1.35220 1.47483 2.36246 3.07805 3.84587 3.85993 3.92237 4.37497 4.45677 4.55737 4.61353 4.78885 4.83883 4.89108 4.95583 4.98145 5.08036 5.13085 5.19698 5.28839 5.33121 5.39465 5.43553 5.50168 5.62564 5.69239 5.76670 5.82428 6.34195 6.78871 7.34389 8.89710 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.041894 B = 0.013974 C = 0.011149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.195278 B = 2003.233959 C = 2510.908232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C -0.085 4.085 4 H 0.073 0.927 5 C -0.109 4.109 6 C -0.119 4.119 7 C -0.109 4.109 8 C -0.080 4.080 9 H 0.043 0.957 10 C 0.001 3.999 11 C -0.522 4.522 12 H 0.028 0.972 13 C 0.001 3.999 14 N -0.955 5.955 15 Si 0.946 3.054 16 H -0.268 1.268 17 H -0.285 1.285 18 H -0.245 1.245 19 H 0.064 0.936 20 H 0.054 0.946 21 H 0.058 0.942 22 H 0.051 0.949 23 H 0.048 0.952 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.039 0.961 29 H 0.047 0.953 30 H 0.019 0.981 31 H 0.015 0.985 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.156 3.578 -3.771 16.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.161 4.161 3 C -0.104 4.104 4 H 0.091 0.909 5 C -0.146 4.146 6 C -0.156 4.156 7 C -0.147 4.147 8 C -0.099 4.099 9 H 0.061 0.939 10 C -0.036 4.036 11 C -0.560 4.560 12 H 0.047 0.953 13 C -0.195 4.195 14 N -0.597 5.597 15 Si 0.769 3.231 16 H -0.193 1.193 17 H -0.211 1.211 18 H -0.169 1.169 19 H 0.083 0.917 20 H 0.073 0.927 21 H 0.077 0.923 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.101 0.899 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.038 0.962 31 H 0.034 0.966 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.021 3.474 -3.744 15.866 hybrid contribution 0.770 -0.804 0.209 1.133 sum -14.251 2.670 -3.536 14.924 Atomic orbital electron populations 1.21768 0.94281 1.01729 1.02335 1.21740 0.96671 0.96412 1.01263 1.21834 0.93702 0.96140 0.98683 0.90852 1.22414 0.97823 0.98268 0.96084 1.22520 0.94171 0.97905 1.01036 1.22253 0.97547 0.97962 0.96910 1.21669 0.94845 0.96143 0.97219 0.93854 1.19709 0.93225 0.94775 0.95893 1.21580 0.93764 0.92782 1.47893 0.95329 1.26009 0.95415 1.03527 0.94550 1.70080 1.08562 1.28632 1.52401 0.85715 0.79952 0.78572 0.78823 1.19280 1.21095 1.16869 0.91651 0.92710 0.92329 0.92977 0.93320 0.91676 0.89852 0.91050 0.90732 0.94227 0.93410 0.96245 0.96641 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.76 71.98 0.70 -2.57 16 2 C -0.12 -3.77 4.11 30.60 0.13 -3.64 16 3 C -0.09 -2.63 2.93 -10.07 -0.03 -2.66 16 4 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 5 C -0.11 -2.77 5.50 31.70 0.17 -2.59 16 6 C -0.12 -3.28 6.91 31.92 0.22 -3.06 16 7 C -0.11 -4.13 5.91 31.67 0.19 -3.94 16 8 C -0.08 -3.23 2.87 -10.07 -0.03 -3.26 16 9 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 10 C 0.00 0.05 2.23 29.85 0.07 0.12 16 11 C -0.52 -31.01 9.24 25.60 0.24 -30.77 16 12 H 0.03 1.87 7.96 -2.91 -0.02 1.85 16 13 C 0.00 0.05 5.47 84.65 0.46 0.51 16 14 N -0.96 -61.68 13.96 21.45 0.30 -61.38 16 15 Si 0.95 45.61 27.47 68.60 1.88 47.50 16 16 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 17 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 18 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 19 H 0.06 1.30 7.48 -2.39 -0.02 1.28 16 20 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 21 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 22 H 0.05 1.69 7.02 -2.38 -0.02 1.67 16 23 H 0.05 1.66 6.34 -2.39 -0.02 1.65 16 24 H 0.06 1.64 7.77 -2.39 -0.02 1.62 16 25 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.05 1.95 7.76 -2.39 -0.02 1.93 16 30 H 0.02 0.93 5.37 -2.39 -0.01 0.92 16 31 H 0.02 0.73 6.45 -2.39 -0.02 0.71 16 32 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -65.99 246.73 5.30 -60.69 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 1.00 Total: 5.07 kcal Atomic # 6 Polarization: -53.99 SS G_CDS: 2.12 Total: -51.87 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: 0.30 Total: -61.38 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.88 Total: 47.50 kcal Total: -65.99 5.30 -60.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261144219.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.522 kcal (2) G-P(sol) polarization free energy of solvation -65.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds