Wall clock time and date at job start Mon Mar 30 2020 02:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 H 1.08996 * 110.01722 * 305.70155 * 3 2 1 5 5 C 1.54274 * 110.03291 * 67.08986 * 3 2 1 6 6 C 1.55016 * 104.13576 * 95.68448 * 5 3 2 7 7 C 1.54894 * 102.75300 * 37.95016 * 6 5 3 8 8 C 1.53879 * 110.03420 * 184.30567 * 3 2 1 9 9 H 1.09004 * 110.02767 * 359.97438 * 8 3 2 10 10 C 1.52997 * 110.03169 * 121.43042 * 8 3 2 11 11 C 1.50699 * 109.47109 * 185.00352 * 10 8 3 12 12 H 1.07997 * 120.00059 * 0.02562 * 11 10 8 13 13 C 1.37880 * 119.99898 * 180.02562 * 11 10 8 14 14 N 1.31514 * 120.00154 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99942 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47054 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47304 * 119.99650 * 15 13 11 18 18 H 1.48505 * 109.47136 * 240.00237 * 15 13 11 19 19 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 20 20 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 22 22 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 23 23 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 24 24 H 1.08996 * 110.48587 * 214.34923 * 5 3 2 25 25 H 1.09004 * 110.48376 * 336.99944 * 5 3 2 26 26 H 1.09004 * 110.76205 * 279.63172 * 6 5 3 27 27 H 1.08995 * 110.90465 * 156.33419 * 6 5 3 28 28 H 1.09000 * 110.48233 * 203.36366 * 7 6 5 29 29 H 1.08998 * 110.48197 * 80.72831 * 7 6 5 30 30 H 1.09006 * 109.47101 * 305.00147 * 10 8 3 31 31 H 1.08997 * 109.47021 * 65.00155 * 10 8 3 32 32 H 0.96993 * 120.00067 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6010 1.9934 -0.8317 5 6 1.6843 2.1288 1.3351 6 6 2.9613 1.9632 2.1980 7 6 4.0994 2.1541 1.1647 8 6 3.5749 1.4589 -0.1085 9 1 3.9565 0.4392 -0.1608 10 6 4.0042 2.2445 -1.3493 11 6 5.4994 2.1495 -1.5116 12 1 6.0849 1.5849 -0.8011 13 6 6.1199 2.7834 -2.5671 14 7 5.4069 3.4705 -3.4326 15 14 7.9732 2.6651 -2.7687 16 1 8.5388 1.8397 -1.6713 17 1 8.2898 2.0355 -4.0758 18 1 8.5645 4.0264 -2.7187 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8934 -0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.4660 3.1846 1.1749 25 1 0.8373 1.6302 1.8064 26 1 3.0032 0.9673 2.6391 27 1 3.0098 2.7292 2.9719 28 1 5.0144 1.6744 1.5121 29 1 4.2707 3.2142 0.9776 30 1 3.5159 1.8277 -2.2302 31 1 3.7168 3.2897 -1.2349 32 1 5.8434 3.9168 -4.1749 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261144221.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:24 Heat of formation + Delta-G solvation = -60.573839 kcal Electronic energy + Delta-G solvation = -11270.301350 eV Core-core repulsion = 9421.288806 eV Total energy + Delta-G solvation = -1849.012544 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.78484 -35.26438 -33.76316 -31.88215 -28.36337 -27.69290 -24.71473 -23.02014 -20.82728 -20.09775 -18.36888 -16.75175 -16.30975 -16.03003 -14.74985 -14.48893 -14.33525 -14.04097 -13.59282 -13.27265 -12.98858 -12.68568 -12.47313 -12.33679 -12.05917 -11.74033 -11.62097 -11.32260 -11.16964 -11.16245 -11.01946 -10.69152 -10.53124 -8.18762 -6.28988 1.37796 1.38031 1.51458 2.40447 3.13712 3.84683 3.87797 3.96367 4.41325 4.42694 4.51181 4.67652 4.80565 4.89290 4.89739 4.95391 5.01403 5.10419 5.18997 5.22190 5.28453 5.35432 5.45876 5.50996 5.56798 5.62214 5.70785 5.83148 5.91700 6.29451 6.87954 7.39723 8.93265 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.056576 B = 0.010211 C = 0.009427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.788945 B = 2741.571520 C = 2969.387031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.092 4.092 4 H 0.044 0.956 5 C -0.113 4.113 6 C -0.115 4.115 7 C -0.108 4.108 8 C -0.079 4.079 9 H 0.051 0.949 10 C 0.036 3.964 11 C -0.530 4.530 12 H 0.058 0.942 13 C -0.004 4.004 14 N -0.936 5.936 15 Si 0.963 3.037 16 H -0.262 1.262 17 H -0.278 1.278 18 H -0.278 1.278 19 H 0.044 0.956 20 H 0.064 0.936 21 H 0.067 0.933 22 H 0.070 0.930 23 H 0.044 0.956 24 H 0.054 0.946 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.041 0.959 30 H -0.019 1.019 31 H -0.014 1.014 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.660 -5.009 9.693 12.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.111 4.111 4 H 0.062 0.938 5 C -0.150 4.150 6 C -0.153 4.153 7 C -0.145 4.145 8 C -0.097 4.097 9 H 0.070 0.930 10 C -0.001 4.001 11 C -0.568 4.568 12 H 0.076 0.924 13 C -0.201 4.201 14 N -0.577 5.577 15 Si 0.787 3.213 16 H -0.186 1.186 17 H -0.204 1.204 18 H -0.204 1.204 19 H 0.063 0.937 20 H 0.083 0.917 21 H 0.086 0.914 22 H 0.088 0.912 23 H 0.062 0.938 24 H 0.073 0.927 25 H 0.106 0.894 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.060 0.940 30 H -0.001 1.001 31 H 0.004 0.996 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.648 -4.916 9.544 12.627 hybrid contribution 1.071 0.322 -0.870 1.417 sum -5.578 -4.594 8.674 11.289 Atomic orbital electron populations 1.21799 0.94585 1.02055 1.01959 1.21547 0.96746 0.95202 1.01403 1.21871 0.94603 0.96782 0.97803 0.93783 1.22438 0.98206 0.99844 0.94554 1.22510 0.93899 1.02030 0.96816 1.22250 0.98063 0.99340 0.94878 1.21790 0.94393 0.98224 0.95304 0.93046 1.19086 0.94819 0.93593 0.92559 1.21699 0.94048 1.31003 1.10082 0.92374 1.25999 1.03443 0.95044 0.95664 1.70115 1.37463 1.34728 1.15383 0.85434 0.79540 0.78060 0.78246 1.18581 1.20418 1.20379 0.93657 0.91676 0.91422 0.91155 0.93762 0.92704 0.89417 0.90545 0.90747 0.92845 0.93980 1.00100 0.99581 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 9.74 71.98 0.70 -2.71 16 2 C -0.11 -3.25 5.12 30.60 0.16 -3.09 16 3 C -0.09 -3.23 2.59 -10.07 -0.03 -3.25 16 4 H 0.04 1.73 7.67 -2.39 -0.02 1.71 16 5 C -0.11 -3.24 6.22 31.72 0.20 -3.05 16 6 C -0.12 -3.28 6.91 31.93 0.22 -3.06 16 7 C -0.11 -4.11 5.91 31.67 0.19 -3.93 16 8 C -0.08 -3.36 2.53 -10.07 -0.03 -3.39 16 9 H 0.05 2.22 7.67 -2.38 -0.02 2.20 16 10 C 0.04 2.01 4.10 29.85 0.12 2.13 16 11 C -0.53 -31.10 8.68 25.60 0.22 -30.88 16 12 H 0.06 3.29 7.72 -2.91 -0.02 3.27 16 13 C 0.00 -0.27 5.46 84.66 0.46 0.20 16 14 N -0.94 -58.76 13.29 21.45 0.28 -58.48 16 15 Si 0.96 45.53 29.54 68.60 2.03 47.56 16 16 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 19 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 20 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 21 H 0.07 1.37 6.50 -2.39 -0.02 1.36 16 22 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.09 2.02 6.22 -2.38 -0.01 2.00 16 26 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.04 1.78 7.76 -2.39 -0.02 1.76 16 30 H -0.02 -1.17 8.14 -2.38 -0.02 -1.19 16 31 H -0.01 -0.85 8.00 -2.39 -0.02 -0.87 16 32 H 0.26 15.39 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -65.06 254.54 5.58 -59.48 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: 1.05 Total: 2.46 kcal Atomic # 6 Polarization: -53.24 SS G_CDS: 2.22 Total: -51.02 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: 0.28 Total: -58.48 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -65.06 5.58 -59.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261144221.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.095 kcal (2) G-P(sol) polarization free energy of solvation -65.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds