Wall clock time and date at job start Mon Mar 30 2020 02:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.53005 * 109.47264 * 295.00560 * 3 2 1 6 6 C 1.53002 * 109.47060 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47013 * 59.99689 * 6 5 3 8 8 C 1.52992 * 109.47464 * 299.99820 * 7 6 5 9 9 H 1.09007 * 109.47262 * 300.00287 * 8 7 6 10 10 C 1.50696 * 109.47614 * 180.02562 * 8 7 6 11 11 H 1.07994 * 120.00287 * 240.00430 * 10 8 7 12 12 C 1.37876 * 119.99763 * 59.99675 * 10 8 7 13 13 N 1.31515 * 120.00506 * 0.02562 * 12 10 8 14 14 Si 1.86801 * 119.99903 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47232 * 90.00350 * 14 12 10 16 16 H 1.48508 * 109.46917 * 210.00280 * 14 12 10 17 17 H 1.48500 * 109.47239 * 330.00135 * 14 12 10 18 18 C 1.52999 * 109.47367 * 60.00012 * 8 7 6 19 19 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 22 22 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 23 23 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 24 24 H 1.08997 * 109.46584 * 299.99168 * 5 3 2 25 25 H 1.08999 * 109.47123 * 59.99430 * 5 3 2 26 26 H 1.08997 * 109.47011 * 299.99778 * 6 5 3 27 27 H 1.09005 * 109.46847 * 179.97438 * 6 5 3 28 28 H 1.09001 * 109.46690 * 179.97438 * 7 6 5 29 29 H 1.08997 * 109.47159 * 60.00180 * 7 6 5 30 30 H 0.96992 * 120.00614 * 179.97438 * 13 12 10 31 31 H 1.08993 * 109.47768 * 180.02562 * 18 8 7 32 32 H 1.09007 * 109.46705 * 59.99934 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 2.1447 3.5693 -1.3070 7 6 3.6695 3.5716 -1.1810 8 6 4.0743 2.8876 0.1262 9 1 3.6394 3.4263 0.9681 10 6 5.5761 2.8904 0.2506 11 1 6.1138 1.9565 0.3221 12 6 6.2637 4.0852 0.2731 13 7 5.6090 5.2225 0.1865 14 14 8.1254 4.0887 0.4266 15 1 8.7338 4.0497 -0.9274 16 1 8.5618 5.3217 1.1300 17 1 8.5606 2.8976 1.1994 18 6 3.5648 1.4449 0.1260 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 2.0698 1.5876 -2.1491 25 1 0.5489 2.1253 -1.3968 26 1 1.7098 4.1080 -0.4652 27 1 1.8566 4.0565 -2.2386 28 1 4.0325 4.5994 -1.1812 29 1 4.1044 3.0329 -2.0228 30 1 6.0927 6.0631 0.2026 31 1 3.8528 0.9576 1.0575 32 1 3.9998 0.9061 -0.7159 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261148936.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:27 Heat of formation + Delta-G solvation = -60.321553 kcal Electronic energy + Delta-G solvation = -11437.929667 eV Core-core repulsion = 9588.928062 eV Total energy + Delta-G solvation = -1849.001605 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.62083 -35.59411 -33.75282 -31.62037 -29.59072 -26.76607 -24.32530 -22.80496 -21.27377 -20.37884 -18.26936 -16.62993 -15.86362 -15.56163 -14.86745 -14.64866 -14.41223 -14.08744 -13.51910 -13.12647 -12.88469 -12.78201 -12.49855 -12.20249 -12.06772 -11.82339 -11.61414 -11.45579 -11.41593 -11.11072 -10.57114 -10.42706 -10.27439 -8.06588 -6.21413 1.39816 1.39915 1.50595 2.43178 3.18548 3.95297 4.04808 4.16021 4.41942 4.53110 4.65645 4.75246 4.80213 4.94101 4.98205 5.02530 5.08280 5.13999 5.19595 5.28286 5.32888 5.48406 5.51325 5.56123 5.61635 5.67305 5.78431 6.06965 6.23397 6.43353 6.92077 7.46388 8.96902 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.069716 B = 0.010756 C = 0.009737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.535384 B = 2602.660842 C = 2874.962758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.085 4.085 4 H 0.053 0.947 5 C -0.101 4.101 6 C -0.115 4.115 7 C -0.104 4.104 8 C 0.043 3.957 9 H -0.012 1.012 10 C -0.536 4.536 11 H 0.049 0.951 12 C 0.009 3.991 13 N -0.918 5.918 14 Si 0.953 3.047 15 H -0.275 1.275 16 H -0.282 1.282 17 H -0.269 1.269 18 C -0.094 4.094 19 H 0.051 0.949 20 H 0.064 0.936 21 H 0.060 0.940 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.024 0.976 30 H 0.259 0.741 31 H 0.038 0.962 32 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.863 -7.100 -2.043 10.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C -0.103 4.103 4 H 0.071 0.929 5 C -0.138 4.138 6 C -0.153 4.153 7 C -0.142 4.142 8 C 0.025 3.975 9 H 0.007 0.993 10 C -0.574 4.574 11 H 0.067 0.933 12 C -0.189 4.189 13 N -0.557 5.557 14 Si 0.778 3.222 15 H -0.201 1.201 16 H -0.208 1.208 17 H -0.194 1.194 18 C -0.132 4.132 19 H 0.070 0.930 20 H 0.083 0.917 21 H 0.079 0.921 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.834 -6.917 -2.039 10.648 hybrid contribution 1.298 0.483 0.224 1.403 sum -6.536 -6.434 -1.816 9.349 Atomic orbital electron populations 1.21790 0.94664 1.02022 1.02004 1.21535 0.96780 0.95179 1.01735 1.21179 0.94865 0.96499 0.97762 0.92861 1.21540 1.00443 0.94757 0.97065 1.21557 0.96198 0.97320 1.00194 1.21418 0.93876 1.01430 0.97449 1.18637 0.93621 0.92066 0.93189 0.99347 1.21660 0.93799 0.92223 1.49757 0.93299 1.25773 1.02690 0.95394 0.95010 1.70031 1.36679 0.97611 1.51414 0.85639 0.80679 0.77560 0.78284 1.20083 1.20805 1.19367 1.21529 0.94946 0.97349 0.99335 0.93008 0.91698 0.92121 0.92422 0.91963 0.92446 0.90460 0.93870 0.92356 0.92812 0.95733 0.93139 0.94323 0.93750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.67 71.98 0.70 -2.52 16 2 C -0.11 -3.11 5.40 30.59 0.17 -2.95 16 3 C -0.08 -2.91 2.19 -10.79 -0.02 -2.93 16 4 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 5 C -0.10 -3.29 4.96 30.60 0.15 -3.14 16 6 C -0.12 -4.51 5.92 30.60 0.18 -4.33 16 7 C -0.10 -5.12 4.98 30.59 0.15 -4.96 16 8 C 0.04 2.27 2.10 -11.54 -0.02 2.24 16 9 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 10 C -0.54 -30.86 8.56 25.60 0.22 -30.64 16 11 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 12 C 0.01 0.54 5.30 84.65 0.45 0.99 16 13 N -0.92 -54.77 11.32 21.45 0.24 -54.53 16 14 Si 0.95 44.87 29.54 68.60 2.03 46.90 16 15 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 16 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 17 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 18 C -0.09 -4.02 4.43 30.59 0.14 -3.89 16 19 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 20 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 21 H 0.06 1.26 6.57 -2.38 -0.02 1.24 16 22 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 23 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.08 2.09 6.56 -2.39 -0.02 2.08 16 26 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 28 H 0.05 3.01 6.07 -2.39 -0.01 3.00 16 29 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 31 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 Total: -1.00 -61.16 248.65 5.42 -55.74 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: 1.05 Total: 4.03 kcal Atomic # 6 Polarization: -54.23 SS G_CDS: 2.10 Total: -52.13 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: 0.24 Total: -54.53 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -61.16 5.42 -55.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261148936.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.584 kcal (2) G-P(sol) polarization free energy of solvation -61.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds