Wall clock time and date at job start Mon Mar 30 2020 01:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 108.76744 * 2 1 4 4 H 1.08006 * 120.00244 * 241.48846 * 3 2 1 5 5 C 1.37875 * 120.00095 * 61.49217 * 3 2 1 6 6 N 1.31513 * 120.00196 * 359.97438 * 5 3 2 7 7 Si 1.86799 * 120.00236 * 179.97438 * 5 3 2 8 8 H 1.48499 * 109.47295 * 59.99758 * 7 5 3 9 9 H 1.48495 * 109.47481 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47172 * 299.99996 * 7 5 3 11 11 C 1.54063 * 108.87728 * 118.51334 * 2 1 3 12 12 C 1.54065 * 112.81774 * 79.06666 * 11 2 1 13 13 C 1.50474 * 112.49521 * 318.27789 * 12 11 2 14 14 C 1.54239 * 108.52878 * 94.14961 * 13 12 11 15 15 C 1.45539 * 112.40172 * 280.02231 * 14 13 12 16 16 C 1.50472 * 108.87833 * 241.49124 * 2 1 3 17 17 H 1.08999 * 109.46690 * 166.12634 * 1 2 3 18 18 H 1.09002 * 109.46697 * 286.12115 * 1 2 3 19 19 H 1.09002 * 109.47211 * 46.12330 * 1 2 3 20 20 H 0.97003 * 120.00448 * 179.97438 * 6 5 3 21 21 H 1.09009 * 108.81188 * 199.92528 * 11 2 1 22 22 H 1.08997 * 108.81365 * 318.19672 * 11 2 1 23 23 H 1.08998 * 108.87747 * 197.50732 * 12 11 2 24 24 H 1.08993 * 108.87914 * 79.05804 * 12 11 2 25 25 H 1.08998 * 109.63130 * 334.43370 * 13 12 11 26 26 H 1.09003 * 109.62769 * 213.85870 * 13 12 11 27 27 H 1.09006 * 108.89937 * 159.26416 * 14 13 12 28 28 H 1.09002 * 108.89769 * 40.77577 * 14 13 12 29 29 H 1.09000 * 108.89421 * 301.18334 * 15 14 13 30 30 H 1.09000 * 108.89592 * 182.69021 * 15 14 13 31 31 H 1.08999 * 109.63075 * 93.08269 * 16 2 1 32 32 H 1.08997 * 109.63351 * 213.67139 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0149 1.4269 0.0000 4 1 2.6114 1.7946 -0.8219 5 6 1.6971 2.2630 1.0492 6 7 0.9704 1.8154 2.0499 7 14 2.2987 4.0314 1.0496 8 1 1.7661 4.7358 -0.1443 9 1 1.8247 4.7153 2.2795 10 1 3.7831 4.0494 1.0136 11 6 2.0285 -0.6959 1.2809 12 6 1.9670 -2.2325 1.1887 13 6 0.7027 -2.7198 0.5341 14 6 0.9775 -2.9266 -0.9695 15 6 0.9382 -1.6786 -1.7172 16 6 2.0169 -0.6796 -1.2511 17 1 -0.3633 -0.9977 -0.2464 18 1 -0.3633 0.2854 0.9873 19 1 -0.3634 0.7123 -0.7408 20 1 0.7472 2.4035 2.7883 21 1 3.0601 -0.3958 1.4653 22 1 1.4145 -0.3691 2.1202 23 1 2.0264 -2.6489 2.1943 24 1 2.8216 -2.5857 0.6117 25 1 -0.0859 -1.9786 0.6636 26 1 0.3982 -3.6648 0.9840 27 1 0.2273 -3.6053 -1.3754 28 1 1.9619 -3.3791 -1.0895 29 1 -0.0436 -1.2223 -1.5910 30 1 1.0913 -1.8956 -2.7744 31 1 2.1876 0.0644 -2.0292 32 1 2.9438 -1.2132 -1.0411 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261151207.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:05 Heat of formation + Delta-G solvation = 1.024759 kcal Electronic energy + Delta-G solvation = -12036.030798 eV Core-core repulsion = 10189.689369 eV Total energy + Delta-G solvation = -1846.341429 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.87736 -33.55558 -31.38091 -30.59598 -26.55919 -25.15000 -23.68928 -21.83989 -19.19129 -17.46077 -16.02563 -15.07404 -14.42236 -14.06661 -13.30360 -12.76958 -12.34658 -12.07114 -11.66848 -11.35586 -11.08192 -10.87795 -10.74639 -10.37024 -10.19996 -9.76251 -9.66104 -9.40952 -9.01185 -8.92817 -8.86726 -8.23283 -8.13416 -5.86274 -3.93500 3.35616 3.40263 3.43293 4.50020 5.37905 5.46482 5.56917 5.74197 6.16026 6.23286 6.32262 6.45094 6.48128 6.54600 6.71021 6.79845 6.84285 6.96771 7.06651 7.09288 7.19387 7.29600 7.35229 7.46156 7.67382 7.87464 7.90907 8.23548 8.35815 8.61516 9.08272 9.70231 11.15651 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.064478 B = 0.014329 C = 0.013334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.150512 B = 1953.578257 C = 2099.346924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.070 3.930 3 C -0.507 4.507 4 H 0.051 0.949 5 C 0.064 3.936 6 N -0.887 5.887 7 Si 0.885 3.115 8 H -0.279 1.279 9 H -0.289 1.289 10 H -0.279 1.279 11 C -0.094 4.094 12 C -0.118 4.118 13 C -0.137 4.137 14 C -0.105 4.105 15 C -0.140 4.140 16 C -0.095 4.095 17 H 0.045 0.955 18 H 0.065 0.935 19 H 0.024 0.976 20 H 0.257 0.743 21 H 0.033 0.967 22 H 0.081 0.919 23 H 0.035 0.965 24 H 0.040 0.960 25 H 0.095 0.905 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.046 0.954 29 H 0.082 0.918 30 H 0.035 0.965 31 H 0.048 0.952 32 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.543 -6.091 -2.833 6.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.069 3.931 3 C -0.546 4.546 4 H 0.069 0.931 5 C -0.136 4.136 6 N -0.525 5.525 7 Si 0.714 3.286 8 H -0.205 1.205 9 H -0.215 1.215 10 H -0.205 1.205 11 C -0.132 4.132 12 C -0.156 4.156 13 C -0.173 4.173 14 C -0.142 4.142 15 C -0.177 4.177 16 C -0.133 4.133 17 H 0.063 0.937 18 H 0.084 0.916 19 H 0.043 0.957 20 H 0.067 0.933 21 H 0.052 0.948 22 H 0.099 0.901 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.113 0.887 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.617 -6.020 -2.650 6.606 hybrid contribution 0.461 1.048 0.066 1.147 sum -0.156 -4.972 -2.584 5.605 Atomic orbital electron populations 1.22607 0.98870 0.97230 1.01812 1.17736 0.92262 0.93433 0.89635 1.21321 1.32480 0.95508 1.05262 0.93057 1.24934 0.95091 0.97924 0.95689 1.69891 1.38056 1.35242 1.09341 0.86778 0.79107 0.85621 0.77141 1.20504 1.21466 1.20500 1.21985 1.00449 0.89303 1.01483 1.21440 0.96498 0.99488 0.98126 1.21780 1.00520 1.00417 0.94631 1.20389 1.00119 0.97616 0.96109 1.20844 1.02750 0.96618 0.97519 1.21399 0.96334 0.96338 0.99188 0.93690 0.91570 0.95706 0.93316 0.94774 0.90091 0.94582 0.94119 0.88746 0.94072 0.94022 0.93486 0.90014 0.94616 0.93339 0.94013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 5.89 37.16 0.22 -3.28 16 2 C 0.07 1.68 0.48 -156.37 -0.07 1.61 16 3 C -0.51 -13.87 7.68 -34.44 -0.26 -14.13 16 4 H 0.05 1.41 7.43 -52.48 -0.39 1.02 16 5 C 0.06 1.77 5.12 -17.82 -0.09 1.68 16 6 N -0.89 -24.76 9.61 55.43 0.53 -24.23 16 7 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 8 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 C -0.09 -2.24 4.22 -25.62 -0.11 -2.35 16 12 C -0.12 -2.32 5.31 -27.44 -0.15 -2.47 16 13 C -0.14 -2.46 5.56 -27.34 -0.15 -2.61 16 14 C -0.10 -1.77 5.21 -29.60 -0.15 -1.92 16 15 C -0.14 -2.58 5.14 -29.60 -0.15 -2.73 16 16 C -0.10 -2.04 5.00 -27.34 -0.14 -2.18 16 17 H 0.05 0.93 2.68 -51.93 -0.14 0.79 16 18 H 0.07 1.70 6.24 -51.93 -0.32 1.38 16 19 H 0.02 0.59 8.04 -51.93 -0.42 0.17 16 20 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 21 H 0.03 0.85 7.97 -51.92 -0.41 0.44 16 22 H 0.08 2.11 6.08 -51.93 -0.32 1.80 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.04 0.77 6.63 -51.93 -0.34 0.43 16 25 H 0.09 1.84 4.26 -51.93 -0.22 1.62 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.77 7.47 -51.93 -0.39 0.39 16 29 H 0.08 1.55 4.83 -51.93 -0.25 1.30 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 1.06 7.48 -51.93 -0.39 0.67 16 32 H 0.04 0.88 6.98 -51.93 -0.36 0.51 16 LS Contribution 227.04 15.07 3.42 3.42 Total: -1.00 -27.13 227.04 -6.91 -34.04 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -4.78 Total: -1.27 kcal Atomic # 6 Polarization: -27.32 SS G_CDS: -1.06 Total: -28.38 kcal Atomic # 7 Polarization: -24.76 SS G_CDS: 0.53 Total: -24.23 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -27.13 -6.91 -34.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261151207.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.063 kcal (2) G-P(sol) polarization free energy of solvation -27.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds